Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2947 143 6e-29 seq2470 109 1e-18 seq863 89.7 1e-12 >seq2947 Length=87168 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| ||||| || ||||| || |||| ||||||||| | || || ||||| || Sbjct 52949 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCC 53008 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || |||||||||||||||||||| || ||| ||||| ||| Sbjct 53009 TCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCC 53068 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || || || |||| |||||| ||| |||||| || | ||||| ||| Sbjct 53069 TGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTC 53128 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || |||||||| ||||| || || Sbjct 53129 TTGCCAGTCAGAGTTTTGACAAAGATCTG 53157 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| ||||| || ||||| || |||| ||||||||| | || || ||||| || Sbjct 53177 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCC 53236 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || || ||||||||||||||||||||||| || ||| ||||| ||| Sbjct 53237 TCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCC 53296 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || || || |||| |||||| ||| |||||| || | ||||| ||| Sbjct 53297 TGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTC 53356 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || ||||| ||||| || || Sbjct 53357 TTGCCAGTCAGTGTTTTGACAAAGATCTG 53385 >seq2470 Length=135016 Score = 109 bits (120), Expect = 1e-18 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| ||||| || ||||| || |||| ||||||||| | || || ||||| ||| Sbjct 94235 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCT 94294 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 || || ||||| || ||||||||||||||||||||||| || ||| ||||| Sbjct 94295 TCAAGTTGCTTACCAGCGAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTC 94347 >seq863 Length=118355 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 199430 AGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTT 199489 ||||| |||||| || || || ||||||| | || ||| ||||||| | ||| || Sbjct 78252 AGAGTGCTCTCCTTCTGAACATTATAGTCAGAAAGTGTTCTTTCATCTTCTAACTGATTA 78311 Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 || || ||||| | | ||| || || ||| ||||||||| || ||||| || Sbjct 78312 CCTGCAAAGATAATCCTCTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATTTTAGAT 78371 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 || | | || | ||| |||| || ||| || |||| || || || ||||| || || Sbjct 78372 TTTATGTTATCAATGGTATCTGATGGTTCAACTTCCAGAGTTATTGTTTTACCGGTAAGT 78431 Query 199610 GTTTTCACAAAAATTTG 199626 |||||||||||||||| Sbjct 78432 TTTTTCACAAAAATTTG 78448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178595952749453