Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq9509 136 4e-27 seq5542 136 4e-27 seq2947 98.7 1e-15 seq12447 93.3 4e-14 seq3766 93.3 4e-14 seq12334 87.8 2e-12 seq995 87.8 2e-12 >seq9509 Length=48202 Score = 136 bits (150), Expect = 4e-27 Identities = 166/224 (74%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| |||||| |||||||||||| ||| || | ||| ||||| | || ||||| | Sbjct 29292 CCTCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 29233 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 ||||||| || || || || || || || || |||| ||||||||| || || || | Sbjct 29232 TGAGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGG 29173 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 | |||| || |||| | || ||||| ||||| | ||||||| ||||||||| || | Sbjct 29172 CTACCACACGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCAG 29113 Query 133097 CCTT-TTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAA 133139 |||| |||||| || || || |||||||||||||| || || Sbjct 29112 CCTTCTTCTTTACAGCT-GGTATGGTTTCGATGGCGTTGAATAA 29070 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 |||||||||||||| ||||||||||| ||||| ||||| || || || || || || | Sbjct 27931 ACCAGATTTTCGTTCACGATGCCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACA 27872 Query 133339 AAATGGCGCTCGTTGTCG-TTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCAC 133397 || || | || ||| | |||| | ||||||||| | | || || || || || || Sbjct 27871 AAGTGCTGTTC-TTGCGGTTTCAGCCCCTCCCAGTCCTTCATATCTTTTGAGAGATCGAC 27813 Query 133398 CTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATA 133457 ||||||| | ||||| || || || || || || |||||||| ||||| |||||| ||| Sbjct 27812 CTCCTCGGCTGTCCAGAAAGAAGCTTCTGCCTTCTTGTACATTCTCCATATGTCCTGATA 27753 Query 133458 TTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493 | || || |||| ||||||| | ||||| || Sbjct 27752 CTCGATAGGGAAAAGAACAAACCTCCTAGGGTTGTC 27717 >seq5542 Length=71200 Score = 136 bits (150), Expect = 4e-27 Identities = 166/224 (74%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| |||||| |||||||||||| ||| || | ||| ||||| | || ||||| | Sbjct 64599 CCTCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 64540 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 ||||||| || || || || || || || || |||| ||||||||| || || || | Sbjct 64539 TGAGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGG 64480 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 | |||| || |||| | || ||||| ||||| | ||||||| ||||||||| || | Sbjct 64479 CTACCACACGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCAG 64420 Query 133097 CCTT-TTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAA 133139 |||| |||||| || || || |||||||||||||| || || Sbjct 64419 CCTTCTTCTTTACAGCT-GGTATGGTTTCGATGGCGTTGAATAA 64377 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 |||||||||||||| ||||||||||| ||||| ||||| || || || || || || | Sbjct 63276 ACCAGATTTTCGTTCACGATGCCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACA 63217 Query 133339 AAATGGCGCTCGTTGTCG-TTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCAC 133397 || || | || ||| | |||| | ||||||||| | | || || || || || || Sbjct 63216 AAGTGCTGTTC-TTGCGGTTTCAGCCCCTCCCAGTCCTTCATATCTTTTGAGAGATCGAC 63158 Query 133398 CTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATA 133457 ||||||| | ||||| || || || || || || |||||||| ||||| |||||| ||| Sbjct 63157 CTCCTCGGCTGTCCAGAAAGAAGCTTCTGCCTTCTTGTACATTCTCCATATGTCCTGATA 63098 Query 133458 TTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493 | || || |||| ||||||| | ||||| || Sbjct 63097 CTCGATAGGGAAAAGAACAAACCTCCTAGGGTTGTC 63062 >seq2947 Length=87168 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || ||||| || || ||||| ||||||||| | || || || | Sbjct 53391 AACATGCAGATCTTTGTCAAAACACTGACTGGCAAGACCATCACCCTTGAGGTAGAACCA 53332 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | ||| ||||||| ||||| || || |||||| | ||| Sbjct 53331 AGTGACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCCCCAGAC 53272 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| ||||| | ||| || ||||| || || |||| | || | ||||||| Sbjct 53271 CAGCAGCGTCTCATCTTCGCTGGTAAACAACTAGAGGACGGAAGAACATTATCCGACTAC 53212 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||| || || | || || ||| | || || ||| Sbjct 53211 AACATCCAGAAAGAGTCCACACTCCATCTTGTCCTTCGT 53173 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || ||||| ||||||||| | || || || | | Sbjct 53160 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 53101 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | ||| ||||||| ||||| || || ||||| | ||||| Sbjct 53100 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 53041 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | || || || ||||| || |||| | || | |||||||||| Sbjct 53040 CAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGACGGAAGAACGTTATCCGACTACAAC 52981 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| || || | || || ||| | || || ||| Sbjct 52980 ATCCAGAAAGAGTCCACACTCCATCTTGTCCTTCGT 52945 >seq12447 Length=33603 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 133209 CTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC 133268 |||||| || || ||||||||||||||||| || || || ||||| ||||| ||| Sbjct 24786 CTCCATAGCTATCTGAAAGCCGTAAAAGCATCGAGCTTCCGTAACCTGAACTTCCTGACT 24727 Query 133269 GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCAC 133328 || | ||| ||||| ||||| |||||||| || |||||||| || || || || || | Sbjct 24726 AAATCTCTCCACCAGGTTTTCATTGACGATTCCATCGCTGGCCGCAAAGAAAGCTAGAAT 24667 Query 133329 GTGCTTGATGAAATGG 133344 ||| ||||| ||| Sbjct 24666 GTGAGATATGAAGTGG 24651 >seq3766 Length=89028 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 133209 CTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC 133268 |||||| || || ||||||||||||||||| || || || ||||| ||||| ||| Sbjct 53995 CTCCATAGCTATCTGAAAGCCGTAAAAGCATCGAGCTTCCGTAACCTGAACTTCCTGACT 54054 Query 133269 GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCAC 133328 || | ||| ||||| ||||| |||||||| || |||||||| || || || || || | Sbjct 54055 AAATCTCTCCACCAGGTTTTCATTGACGATTCCATCGCTGGCCGCAAAGAAAGCTAGAAT 54114 Query 133329 GTGCTTGATGAAATGG 133344 ||| ||||| ||| Sbjct 54115 GTGAGATATGAAGTGG 54130 >seq12334 Length=23141 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || ||||| | ||||||||||| || || | ||||||||||| || || || | | | Sbjct 1680 GGGATTCCACCAGACCAACAGCGTCTTATCTTTGCGGGCAAACAACTTGAAGATGGGAGG 1739 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| |||||||||||||| || ||| | ||||| ||| |||| ||||| Sbjct 1740 ACCCTCTCAGACTACAACATCCAGAAAGAATCCACGCTCCATCTGGTCCTGCG 1792 >seq995 Length=320003 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || ||||| | ||||||||||| || || | ||||||||||| || || || | | | Sbjct 192403 GGGATTCCACCAGACCAACAGCGTCTTATCTTTGCGGGCAAACAACTTGAAGATGGGAGG 192462 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| |||||||||||||| || ||| | ||||| ||| |||| ||||| Sbjct 192463 ACCCTCTCAGACTACAACATCCAGAAAGAATCCACGCTCCATCTGGTCCTGCG 192515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500038009682560