Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1416 105 8e-18 seq9509 86.0 7e-12 seq5542 86.0 7e-12 >seq1416 Length=111358 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 ||| |||||| ||| |||||||| | |||| | || || || || | ||||| ||| Sbjct 37471 GTGAACTCTACAATCTCTGTACAGAGGTTGCTGCATTTGATTGTACCAAGGTTCTTCTGG 37412 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 |||||||| |||| || |||||||||||||||||||| ||||| || |||||||| ||| Sbjct 37411 TTACTCTTCCTGTTACAAGCATCCTTGTAGAGCATGTATGGCGTTCCGGTCTCCGTTTGT 37352 Query 106625 G 106625 | Sbjct 37351 G 37351 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 |||||||| | ||||| || || | | ||||||| || || | ||| || || |||||| Sbjct 39416 TAGATGTTACTGGTGTATGGCTCTATGGATTCATTGTTTCCGAGGATCTGGGCCGTGGAG 39357 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACC 106035 |||||||||||||| || | || ||||||||||| || || Sbjct 39356 GCTGTTGGCATTGGGGCTAACAGGAGACTGTTACGTAGGCC 39316 >seq9509 Length=48202 Score = 86.0 bits (94), Expect = 7e-12 Identities = 159/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||| | | ||| ||||| || ||||| ||||||||||| | || || |||| Sbjct 29292 CCTCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 29233 Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 | | ||| | || || ||| ||||| || ||||| ||||| ||||| ||| ||||| Sbjct 29232 TGAGCCAGAAGATTGCAGCA-AATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAG 29174 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCATTTCATTGCCCATTT 117470 || | | || ||| | | | | ||||||| ||| | ||| |||| ||||| | Sbjct 29173 GCTACCACACGTTCGCTGTACCTG-GCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTC 29115 Query 117471 CGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTG 117518 |||||||||| | | ||||| |||| |||||| | ||||| || Sbjct 29114 AGCCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCGTTGAATAATTG 29067 >seq5542 Length=71200 Score = 86.0 bits (94), Expect = 7e-12 Identities = 159/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||| | | ||| ||||| || ||||| ||||||||||| | || || |||| Sbjct 64599 CCTCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 64540 Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 | | ||| | || || ||| ||||| || ||||| ||||| ||||| ||| ||||| Sbjct 64539 TGAGCCAGAAGATTGCAGCA-AATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAG 64481 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCATTTCATTGCCCATTT 117470 || | | || ||| | | | | ||||||| ||| | ||| |||| ||||| | Sbjct 64480 GCTACCACACGTTCGCTGTACCTG-GCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTC 64422 Query 117471 CGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTG 117518 |||||||||| | | ||||| |||| |||||| | ||||| || Sbjct 64421 AGCCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCGTTGAATAATTG 64374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589821807549160