Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq5540 91.5 2e-13 seq142 91.5 2e-13 >seq5540 Length=25926 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 154945 ACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAA 155004 || ||||||| || || || || ||||| || ||| | || || ||||| ||||| | Sbjct 22716 ACCATGGTGGACAAGTCTACCTGGATGGGGCCAATATGAACGCCCAGGTGGGACTCTGTA 22775 Query 155005 AACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTC 155064 |||| | || ||||| || ||||| | ||| || ||| | || || || |||||||||| Sbjct 22776 GACCAGGAGACTATGGAGCTGATGTCTCTCACCTGAACCTCCACAAGACTTTCTGTATTC 22835 Query 155065 CACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 |||| || || || || || || | || ||||| || || Sbjct 22836 CACACGGGGGAGGTGGACCAGGAATGGGACCTATTGGGGT 22875 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 153885 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAA 153944 |||||| | || |||||||| | |||| ||||||| || || ||||| ||| | ||| Sbjct 15234 GGTAATGAGGCTTACAGATTGTCTTTACAAGCTAGAGAACAACACATCAGAAGACAGAAA 15293 Query 153945 GCAACCAGTAACATCTGCACAGCTCAGG 153972 || ||||| ||||||||||||||||||| Sbjct 15294 GCTACCAGCAACATCTGCACAGCTCAGG 15321 >seq142 Length=236935 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 154945 ACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAA 155004 || ||||||| || || || || ||||| || ||| | || || ||||| ||||| | Sbjct 129942 ACCATGGTGGACAAGTCTACCTGGATGGCGCCAATATGAACGCCCAGGTGGGACTCTGTA 129883 Query 155005 AACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTC 155064 |||| | || ||||| || ||||| | ||| || ||| | || || || |||||||||| Sbjct 129882 GACCAGGAGACTATGGAGCTGATGTCTCTCACCTGAACCTCCACAAGACTTTCTGTATTC 129823 Query 155065 CACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 |||| || || || || || || | || ||||| || || Sbjct 129822 CACACGGGGGAGGTGGACCAGGAATGGGACCTATTGGGGT 129783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579056709390560