Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq5540 98.7 1e-15 seq142 98.7 1e-15 >seq5540 Length=25926 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 159623 ATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAAC 159682 ||||||| || || || || ||||| || ||| | || || ||||| || || | || Sbjct 22719 ATGGTGGACAAGTCTACCTGGATGGGGCCAATATGAACGCCCAGGTGGGACTCTGTAGAC 22778 Query 159683 CATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCAC 159742 || | |||||||| || ||||| | ||| || ||| | || ||||| ||||||||||||| Sbjct 22779 CAGGAGACTATGGAGCTGATGTCTCTCACCTGAACCTCCACAAGACTTTCTGTATTCCAC 22838 Query 159743 ATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 | || || || || || || | || |||||||| || Sbjct 22839 ACGGGGGAGGTGGACCAGGAATGGGACCTATTGGGGT 22875 >seq142 Length=236935 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 159623 ATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAAC 159682 ||||||| || || || || ||||| || ||| | || || ||||| || || | || Sbjct 129939 ATGGTGGACAAGTCTACCTGGATGGCGCCAATATGAACGCCCAGGTGGGACTCTGTAGAC 129880 Query 159683 CATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCAC 159742 || | |||||||| || ||||| | ||| || ||| | || ||||| ||||||||||||| Sbjct 129879 CAGGAGACTATGGAGCTGATGTCTCTCACCTGAACCTCCACAAGACTTTCTGTATTCCAC 129820 Query 159743 ATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 | || || || || || || | || |||||||| || Sbjct 129819 ACGGGGGAGGTGGACCAGGAATGGGACCTATTGGGGT 129783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587892727552240