Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq9509 113 5e-20 seq5542 113 5e-20 >seq9509 Length=48202 Score = 113 bits (124), Expect = 5e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| || || || || | ||| ||||| ||||| | || ||||| | ||| | ||| | Sbjct 29292 CCTCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 29233 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | |||||| || | |||||||||||| || || || || || || || || ||||| | Sbjct 29232 TGAGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGG 29173 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 | || | | ||| | || || || | || | | ||||| ||||| ||||| |||| Sbjct 29172 CTACCACACGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCAG 29113 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 ||||||| |||||| ||| || || || || | || |||| Sbjct 29112 CCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCGTTGAATA 29071 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 19221 TGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTAT 19280 || ||| || | ||||| || || | |||||||||||||||||| ||||||||||| || Sbjct 28757 TGGATCCTTGATATATGTGTCGATAAGTAAACTGTACATTTCTGAGTGAATATTTTCGAT 28698 Query 19281 AGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313 || ||||| |||||||| || || || || || Sbjct 28697 TGCAATCTGGAATCCGTAGAAGCACCTAGCCTC 28665 >seq5542 Length=71200 Score = 113 bits (124), Expect = 5e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| || || || || | ||| ||||| ||||| | || ||||| | ||| | ||| | Sbjct 64599 CCTCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 64540 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | |||||| || | |||||||||||| || || || || || || || || ||||| | Sbjct 64539 TGAGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGG 64480 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 | || | | ||| | || || || | || | | ||||| ||||| ||||| |||| Sbjct 64479 CTACCACACGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCAG 64420 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 ||||||| |||||| ||| || || || || | || |||| Sbjct 64419 CCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCGTTGAATA 64378 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 19221 TGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTAT 19280 || ||| || | ||||| || || | |||||||||||||||||| ||||||||||| || Sbjct 64064 TGGATCCTTGATATATGTGTCGATAAGTAAACTGTACATTTCTGAGTGAATATTTTCGAT 64005 Query 19281 AGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313 || ||||| |||||||| || || || || || Sbjct 64004 TGCAATCTGGAATCCGTAGAAGCACCTAGCCTC 63972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561957318704760