Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq9509 87.8 2e-12 seq5542 87.8 2e-12 seq12447 84.2 3e-11 seq3766 84.2 3e-11 >seq9509 Length=48202 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 37446 ATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGA 37505 ||||| || || || |||||||| |||||||| |||||||||||||| || || ||||| Sbjct 28747 ATATATGTGTCGATAAGTAAACTGTACATTTCTGAGTGAATATTTTCGATTGCAATCTGG 28688 Query 37506 AAACCATAAAAACACCTAGCTTCAGATAATTGAACATC 37543 || || || || |||||||| || ||| ||||| || Sbjct 28687 AATCCGTAGAAGCACCTAGCCTCCGATGCCTGAACCTC 28650 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||| || || || | ||| ||||| || || | ||||||||||| || | ||| || Sbjct 29290 TCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCTTG 29231 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| || ||||| ||||| ||||| || || || || || || || || ||||| ||| Sbjct 29230 AGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGGCT 29171 Query 37320 ACAAGACGT 37328 || | |||| Sbjct 29170 ACCACACGT 29162 >seq5542 Length=71200 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 37446 ATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGA 37505 ||||| || || || |||||||| |||||||| |||||||||||||| || || ||||| Sbjct 64054 ATATATGTGTCGATAAGTAAACTGTACATTTCTGAGTGAATATTTTCGATTGCAATCTGG 63995 Query 37506 AAACCATAAAAACACCTAGCTTCAGATAATTGAACATC 37543 || || || || |||||||| || ||| ||||| || Sbjct 63994 AATCCGTAGAAGCACCTAGCCTCCGATGCCTGAACCTC 63957 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||| || || || | ||| ||||| || || | ||||||||||| || | ||| || Sbjct 64597 TCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCTTG 64538 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| || ||||| ||||| ||||| || || || || || || || || ||||| ||| Sbjct 64537 AGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGGCT 64478 Query 37320 ACAAGACGT 37328 || | |||| Sbjct 64477 ACCACACGT 64469 >seq12447 Length=33603 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 37253 ttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGC 37312 |||||| | ||||||||| |||||||| || ||||| |||||||| || || |||| ||| Sbjct 26739 TTTTTTCAACCAAAATATGGCTGCAAACGACCCAGAGAAGAAAATGCCCTCCACTGATGC 26680 Query 37313 AAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCA 37372 ||||||||| || | | |||| | || || |||||||| || || ||| Sbjct 26679 AAATGCTACTAGCCTCTCAGCGAATGATGCCTCGGAACTTGAAATCCACTTCAATGCCCA 26620 Query 37373 ATCTGCCTTTAATTTAACACA 37393 ||||| ||| ||| ||||| Sbjct 26619 GTCTGCTTTTTTTTTGACACA 26599 Score = 82.4 bits (90), Expect = 9e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 37491 TCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAA 37550 || |||||||||||||| || ||||| || | |||||| | | ||||| || | | | Sbjct 24785 TCCATAGCTATCTGAAAGCCGTAAAAGCATCGAGCTTCCGTAACCTGAACTTCCTGACTA 24726 Query 37551 AACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAA 37608 || |||| | | ||||||||| || || ||||| || || ||||||||||| |||| Sbjct 24725 AATCTCTCCACCAGGTTTTCATTGACGATTCCATCGCTGGCCGCAAAGAAAGCTAGAA 24668 >seq3766 Length=89028 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 37253 ttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGC 37312 |||||| | ||||||||| |||||||| || ||||| |||||||| || || |||| ||| Sbjct 52042 TTTTTTCAACCAAAATATGGCTGCAAACGACCCAGAGAAGAAAATGCCCTCCACTGATGC 52101 Query 37313 AAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCA 37372 ||||||||| || | | |||| | || || |||||||| || || ||| Sbjct 52102 AAATGCTACTAGCCTCTCAGCGAATGATGCCTCGGAACTTGAAATCCACTTCAATGCCCA 52161 Query 37373 ATCTGCCTTTAATTTAACACA 37393 ||||| ||| ||| ||||| Sbjct 52162 GTCTGCTTTTTTTTTGACACA 52182 Score = 82.4 bits (90), Expect = 9e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 37491 TCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAA 37550 || |||||||||||||| || ||||| || | |||||| | | ||||| || | | | Sbjct 53996 TCCATAGCTATCTGAAAGCCGTAAAAGCATCGAGCTTCCGTAACCTGAACTTCCTGACTA 54055 Query 37551 AACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAA 37608 || |||| | | ||||||||| || || ||||| || || ||||||||||| |||| Sbjct 54056 AATCTCTCCACCAGGTTTTCATTGACGATTCCATCGCTGGCCGCAAAGAAAGCTAGAA 54113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592157178026360