Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq863 105 5e-18 seq6761 104 2e-17 seq5140 104 2e-17 >seq863 Length=118355 Score = 105 bits (116), Expect = 5e-18 Identities = 124/166 (75%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 101306 GTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATG 101365 ||||| |||| || || || ||||||||||| || | | ||||||||| || ||||| Sbjct 78288 GTTCTTTCATCTTCTAACTGATTACCTGCAAAGATAATCCTCTGTTGATCAGGAGGAATT 78347 Query 101366 CCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCA 101425 ||||| || ||||||||||| ||||| | || | || || || | ||| ||||| Sbjct 78348 CCTTCCTTGTCTTGAATTTTAGATTTTATGTTATCAATGGTATCTGATGGTTCAACTTCC 78407 Query 101426 AGAGTGACCGTTTTGCCGGTTAAAGTTTTT--ACAAATATCTGCAT 101469 ||||| | ||||| ||||| |||||||| ||||| || ||||| Sbjct 78408 AGAGTTATTGTTTTACCGGT--AAGTTTTTTCACAAAAATTTGCAT 78451 >seq6761 Length=90290 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 ||||| || | ||| || || || || |||| ||| || || | | ||||| || Sbjct 70957 CGTAAGACAAGATGCAGAGTGCTCTCGTTCTGTACATTATAGTCAGAAAGTGTTCTTTCA 70898 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || || || || ||||||||||| || | | ||||||||| || ||||| ||||| || Sbjct 70897 TCTTCTAACTGATTACCTGCAAAAATAATCCTCTGTTGATCAGGAGGAATTCCTTCCTTG 70838 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 |||||||||| |||||| | || | || || |||| | | |||| ||||| | Sbjct 70837 TCTTGAATTTGAGATTTTACGTTATCGATGGTATCTGACGGTACAACTTGCAGAGTTATT 70778 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || | ||||| | |||||| ||||| Sbjct 70777 GTTTTACCAGTAAGTGTTTTCATAAATATTTGCAT 70743 >seq5140 Length=69470 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 |||||||| ||||||| || || || ||||||||||| | | ||||| || Sbjct 6288 CGTAAAACCAAATGAACAGTGCTCTCCTTACAAATATTGTAATCAGAAAGTGTTCTTCCA 6229 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 | || || || |||||| |||| || | ||||||||||| ||||| |||| ||| Sbjct 6228 TGTTCTAACTGTTTACCTACAAAGATTAGCCGCTGTTGATCCATAGGAATTCCTTTTTTG 6169 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 ||||||||||| ||||| | |||| | || || | || ||| ||||| |||| | Sbjct 6168 TCTTGAATTTTAAATTTTAAATTTTCAATGGTATCTGTCGGTTCAACTTCCAGAGATATT 6109 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || |||| ||||| || || || |||| Sbjct 6108 GTTTTACCAGTTAGTGTTTTCACTAAAATTCGCAT 6074 Score = 100 bits (110), Expect = 2e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 101245 TCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGAT 101304 |||||| | |||| || ||||||| || ||| || |||||||||| | Sbjct 6526 TCCTCTGAGCCGTATCACCAAATGAACAGTGCTTTCATTACAAATATTGTAATTAAAAAG 6467 Query 101305 AGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAAT 101364 ||||| |||| || || | |||||||||||| || | |||||||||| | ||||| Sbjct 6466 TGTTCTTCCATCTTCTAACTTCTTACCTGCAAAGATAAGCTGCTGTTGATCCGTAGGAAT 6407 Query 101365 GCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTC 101424 |||||||| ||||||||||| ||||| | |||| | || || | || ||| ||||| Sbjct 6406 TCCTTCTTTGTCTTGAATTTTAAATTTTAAATTTTCAATGGTATCTGTCGGTTCAACTTC 6347 Query 101425 AAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | ||||| || || ||||| || | || ||||| Sbjct 6346 CAGAGATATTGTTTTACCAGTAGGTGTTTTCACTATCATTTGCAT 6302 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 101288 ATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGC 101347 || ||||||| | | ||||| |||| || || | |||||||||||| || | || Sbjct 6027 ATGTTGTAATTAGAAAGTGTTCTTCCATCTTCTAACTTCTTACCTGCAAAGATAAGCTGC 5968 Query 101348 TGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTG 101407 |||||||| | ||||| | |||||| |||||||| | ||||||| |||| | || Sbjct 5967 TGTTGATCCGTAGGAATTCTTTCTTTGTCTTGAATCATAGATTTTACATTTTCAATGGTA 5908 Query 101408 TCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGC 101467 || |||| ||| ||||| || || | |||| || || | ||||| || || || ||| Sbjct 5907 TCTGACGGTTCAACTTCCAGCGTTAATGTTTCACCAGTAAGTGTTTTCACTAAAATTTGC 5848 Query 101468 AT 101469 || Sbjct 5847 AT 5846 Score = 93.3 bits (102), Expect = 3e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 101288 ATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGC 101347 ||||||||||| | | ||||| ||| || || || |||||| |||| || | | | Sbjct 5343 ATATTGTAATCAGAAAGTGTTCTTCCATGTTCTAACTGTTTACCTACAAAGATTAGCCCC 5284 Query 101348 TGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTG 101407 |||||||| ||||| |||| ||| ||||||||||| ||||||| |||| | || Sbjct 5283 TGTTGATCCATAGGAATTCCTTTTTTGTCTTGAATTTTAAATTTTACATTTTCAATGGTA 5224 Query 101408 TCAGACGTTTCCACTTCAAGAGTGACCGTTT 101438 || |||| ||| ||||| ||||| | |||| Sbjct 5223 TCTGACGGTTCAACTTCCAGAGTTAATGTTT 5193 Score = 87.8 bits (96), Expect = 1e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 101288 ATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGC 101347 || |||||||| | | ||||| ||| || || | |||||| |||| || | ||| Sbjct 5799 ATGTTGTAATCAGAAAGTGTTCTTCCATGTTCTAACTTTTTACCTACAAAGATTAGCCGC 5740 Query 101348 TGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTG 101407 ||||||| | ||||| |||||||| ||||||||||| |||||| |||| | || Sbjct 5739 TGTTGATTCGTAGGAATTCCTTCTTTGTCTTGAATTTTAAATTTTACTTTTTCAATGGTA 5680 Query 101408 TCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGC 101467 || |||| ||| |||| ||||| | |||| || || ||||| || || || ||| Sbjct 5679 TCTGACGGTTCAACTTTCAGAGTTAATGTTTCACCAGTAGGTGTTTTCACTAAAATTTGC 5620 Query 101468 A 101468 | Sbjct 5619 A 5619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396174277726563