Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq5140 100 2e-16 >seq5140 Length=69470 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||| ||||||||||| | ||||||| || ||| ||||||| ||| || ||| Sbjct 6063 AGCCGTAACACCAAATGAACAGTGCTCTTATTCGAAATGTTGTAATTAGAAAGTGTTCTT 6004 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || |||| |||||| ||||| || || ||||||||||||| |||| | || Sbjct 6003 CCATCTTCTAACTTCTTACCTGCAAAGATAAGCTGCTGTTGATCCGTAGGAATTCTTTCT 5944 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||| | ||||||| | | | ||||||| || || |||| ||| Sbjct 5943 TTGTCTTGAATCATAGATTTTACATTTTCAATGGTATCTGACGGTTCAACTTCCAGCGTT 5884 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | |||| || || | ||||| || ||||| ||||| Sbjct 5883 AATGTTTCACCAGTAAGTGTTTTCACTAAAATTTGCAT 5846 Score = 95.1 bits (104), Expect = 9e-15 Identities = 156/224 (70%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 48544 CCCTT-AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGA 48602 ||||| ||||| |||||||| || | ||||||||||| |||||||||| ||| || Sbjct 7209 CCCTTGAGCCGTAACACCAACTGAACAGTGCTCTCTTTACAAATATTGTAACTAGAAAGT 7150 Query 48603 CTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACG 48662 || || || || ||||| |||| ||||| || || |||||||||| | |||| Sbjct 7149 GTTTTGTCATCTTCTAACTGTCTACCTGCAAAGATAAGCAGCTGTTGATCAGGAGGAATT 7090 Query 48663 CCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCC 48722 || || ||||| |||||| ||||||| | | | |||||| || || ||| Sbjct 7089 CCTTCTTTGTCTTGAATCTTAGATTTTACATTTTCAATGGTATCTGACAGTTCAACGTCC 7030 Query 48723 ACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | | || ||||| || | | |||| ||| ||||| ||||| Sbjct 7029 AGAGATATTGTTTTACCAGAAAGTGTTTCTACTAAAATTTGCAT 6986 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||| || |||||||| | |||||||| || ||||||||||||||| || ||| Sbjct 6291 AGCCGTAAAACCAAATGAACAGTGCTCTCCTTACAAATATTGTAATCAGAAAGTGTTCTT 6232 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | | || ||||| ||||| |||| || || |||||||||||| | |||| || | Sbjct 6231 CCATGTTCTAACTGTTTACCTACAAAGATTAGCCGCTGTTGATCCATAGGAATTCCTTTT 6172 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||||| | | | | |||| || || || |||| | Sbjct 6171 TTGTCTTGAATTTTAAATTTTAAATTTTCAATGGTATCTGTCGGTTCAACTTCCAGAGAT 6112 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | ||||| || ||||| |||| Sbjct 6111 ATTGTTTTACCAGTTAGTGTTTTCACTAAAATTCGCAT 6074 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 48543 CCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGA 48602 || || ||||| | ||||||||| | ||||| || || ||||||||||| | | || Sbjct 6525 CCTCTGAGCCGTATCACCAAATGAACAGTGCTTTCATTACAAATATTGTAATTAAAAAGT 6466 Query 48603 CTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACG 48662 ||| | || || |||| |||||| ||||| || || ||||||||||||| |||| Sbjct 6465 GTTCTTCCATCTTCTAACTTCTTACCTGCAAAGATAAGCTGCTGTTGATCCGTAGGAATT 6406 Query 48663 CCCTCCTTGTC 48673 || || ||||| Sbjct 6405 CCTTCTTTGTC 6395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380837508526557