Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1416 89.7 1e-12 >seq1416 Length=111358 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 213779 GGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGAC 213838 ||||||||| ||| |||| || || | | | |||||||| |||||| ||||| || | Sbjct 36956 GGGACACATCAGGGTCCAATCGCCATTCTGTTCGACTCTCTTCATGAAGAGGTCTGGAAT 36897 Query 213839 CCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCA-GAGTTTTTGCGCA 213897 ||| || || || |||||||||| || || ||| || || | ||| ||| Sbjct 36896 CCATAGGGCATAAAAGAGGTCCCTGGCTCTTTGTTCTTCCTTGCCGTGATTCTTTTTGCA 36837 Query 213898 GATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG 213957 ||| | ||| || ||| |||||||||||||||||||| ||| || || || || || | Sbjct 36836 -ATCCAAAAATTCGTAGACGTCCGCGTGCCACGGCTCCAAGTAAATTGCGAAAGCACCAG 36778 Query 213958 GCCTCT 213963 | |||| Sbjct 36777 GTCTCT 36772 Score = 89.7 bits (98), Expect = 1e-12 Identities = 130/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 213174 TAGGGGCCATGCTCCTTG-GCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGT 213232 ||||| |||| || ||| |||| ||| ||| | | ||||| || ||||||||||| Sbjct 38618 TAGGGTCCAT-CTTGTTGTGCCAACTCACAGCTTGTTTCAAGGGCGGCATAGTAGATGGT 38560 Query 213233 TTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCG 213292 |||||| ||||| | ||||| |||| ||| ||||| | ||| || | | |||| | Sbjct 38559 TTCAAAGATCTCAATATTGAGTTTCTGGGCTTCTGGACTCTCGAATGGAAACCTCATCAG 38500 Query 213293 TTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA 213352 | ||| | || || ||||| || || |||||||||||||| | || |||| || || Sbjct 38499 TATGAAAGCGTCCGCAAGCCCTTGAACTCCGATGCCGATGGGACGATGCCTCATATTGGA 38440 Query 213353 C 213353 | Sbjct 38439 C 38439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931281763554560