Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq9509 122 2e-22 seq5542 122 2e-22 seq1416 100 5e-16 >seq9509 Length=48202 Score = 122 bits (134), Expect = 2e-22 Identities = 162/217 (75%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 25795 GCCATCGAGCACATACCCAGCA-TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAA 25853 |||||||| |||||| ||| | |||| |||||| ||||| ||||||||||| | Sbjct 29079 GCCATCGAAACCATACC-AGCTGTAAAGAAGAAGGCTGACTGGGCGCTGAAGTGGATCGA 29137 Query 25854 CAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTT 25913 | | | || | || |||| || ||||||||||||| ||||| ||||||||||| Sbjct 29138 CCACAAAGTAGCCAGGTACAGCGAACGTGTGGTAGCCTTTGCCGCTGTCGAGGGCATCTT 29197 Query 25914 TTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGA-CCATGCCCGGGC 25972 |||| || || ||||| || ||||||||||||||| | | | ||| ||||| || | Sbjct 29198 TTTCTCAGGATCATTTGCTGCAATCTTCTGGCTCAAG-AAACGTGGATTAATGCCAGGCC 29256 Query 25973 TGTAC-TTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 | ||| || || ||||| ||||| |||||||| |||| Sbjct 29257 T-TACATTCTCTAACGAACTCATTAGCAGGGATGAGG 29292 >seq5542 Length=71200 Score = 122 bits (134), Expect = 2e-22 Identities = 162/217 (75%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 25795 GCCATCGAGCACATACCCAGCA-TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAA 25853 |||||||| |||||| ||| | |||| |||||| ||||| ||||||||||| | Sbjct 64386 GCCATCGAAACCATACC-AGCTGTAAAGAAGAAGGCTGACTGGGCGCTGAAGTGGATCGA 64444 Query 25854 CAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTT 25913 | | | || | || |||| || ||||||||||||| ||||| ||||||||||| Sbjct 64445 CCACAAAGTAGCCAGGTACAGCGAACGTGTGGTAGCCTTTGCCGCTGTCGAGGGCATCTT 64504 Query 25914 TTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGA-CCATGCCCGGGC 25972 |||| || || ||||| || ||||||||||||||| | | | ||| ||||| || | Sbjct 64505 TTTCTCAGGATCATTTGCTGCAATCTTCTGGCTCAAG-AAACGTGGATTAATGCCAGGCC 64563 Query 25973 TGTAC-TTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 | ||| || || ||||| ||||| |||||||| |||| Sbjct 64564 T-TACATTCTCTAACGAACTCATTAGCAGGGATGAGG 64599 >seq1416 Length=111358 Score = 100 bits (110), Expect = 5e-16 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 221954 TCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACA--CCTGGCGGGACACATCAGAC 222011 ||||||| ||| || | |||| | || ||||| || | ||| ||||||||||| Sbjct 37000 TCAAACTCTTCCCCCCAAACCTCATGTAGTCCTGGGCATTCATGG--GGACACATCAGGG 36943 Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071 |||| | || | || ||| |||| |||||||||||| || ||||| || || | || Sbjct 36942 TCCAATCGCCATTCTGTTCGACTCTCTTCATGAAGAGGTCTGGAATCCATAGGGCATAAA 36883 Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131 |||| || |||| | || || ||| ||||| || || | ||||||||| || Sbjct 36882 AGAGGTCCCTGGCTCTTTGTTCTTCCTTGCCGTGATTCTTTTTGCAATCCAAAAATTCGT 36823 Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 | | ||| |||||||||||||||| || | || | ||| || |||| || Sbjct 36822 AGACGTCCGCGTGCCACGGCTCCAAGTAAATTGCGAAAGCACCAGGTCTCT 36772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928594487936960