Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq5540 95.1 1e-14 seq142 95.1 1e-14 >seq5540 Length=25926 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || |||||||| || | || || || || || || |||||||||||||| ||||| || Sbjct 22875 ACCCCAATAGGTCCCATTCCTGGTCCACCTCCCCCGTGTGGAATACAGAAAGTCTTGTGG 22816 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | || || ||| | ||||| || |||||||| | |||| | || || ||||| || Sbjct 22815 AGGTTCAGGTGAGAGACATCAGCTCCATAGTCTCCTGGTCTACAGAGTCCCACCTGGGCG 22756 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGT 138342 || | ||| || ||||| || || || || ||||||| || Sbjct 22755 TTCATATTGGCCCCATCCAGGTAGACTTGTCCACCATGGT 22716 >seq142 Length=236935 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || |||||||| || | || || || || || || |||||||||||||| ||||| || Sbjct 129783 ACCCCAATAGGTCCCATTCCTGGTCCACCTCCCCCGTGTGGAATACAGAAAGTCTTGTGG 129842 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | || || ||| | ||||| || |||||||| | |||| | || || ||||| || Sbjct 129843 AGGTTCAGGTGAGAGACATCAGCTCCATAGTCTCCTGGTCTACAGAGTCCCACCTGGGCG 129902 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGT 138342 || | ||| || ||||| || || || || ||||||| || Sbjct 129903 TTCATATTGGCGCCATCCAGGTAGACTTGTCCACCATGGT 129942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578842367168680