Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1416 120 4e-22 seq9509 86.0 7e-12 seq5542 86.0 7e-12 >seq1416 Length=111358 Score = 120 bits (132), Expect = 4e-22 Identities = 105/131 (80%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 75887 ATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAAC 75946 ||||| || |||| |||||||| ||||| ||||| ||||| |||||||||||||||||| Sbjct 37341 ATTCTGGAAGCACAAACGGAGACCGGAACGCCATACATGCTCTACAAGGATGCTTGTAAC 37400 Query 75947 AAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATT 76006 | |||||||||||| ||||| | || |||||||| || || || || || || ||| Sbjct 37401 AGGAAGAGTAACCAGAAGAACCTTGGTACAATCAAATGCAGCAACCTCTGTACAGAGATT 37460 Query 76007 TTAGAGTACAC 76017 |||||| ||| Sbjct 37461 GTAGAGTTCAC 37471 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 76487 GGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTG 76546 || || ||||||||||| || | || |||||||||||||||||||| || || ||| | Sbjct 39316 GGCCTACGTAACAGTCTCCTGTTAGCCCCAATGCCAACAGCCTCCACGGCCCAGATCCTC 39375 Query 76547 GGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGA 76597 || || ||||||| | | || |||||||| | ||||||||| |||||| Sbjct 39376 GGAAACAATGAATCCATAGAGCCATACACCAGTAACATCTACACCAGAAGA 39426 >seq9509 Length=48202 Score = 86.0 bits (94), Expect = 7e-12 Identities = 159/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 64984 CAGTTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATG 65043 || ||||| | |||||| |||| ||||| | | |||||||||| | ||||| || Sbjct 29067 CAATTATTCAACGCCATCGAAACCATACCAGCTGTAAAGAAGAAGGCTGACTGGGCGCTG 29126 Query 65044 AAATGGTTTGAC-ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGT 65102 || ||| | ||| ||||||| | | | | ||| || | | || ||||| ||| Sbjct 29127 AAGTGGATCGACCACAAAGTAGC-CAGGTACAGCGAACGTGTGGTAGCCTTTGCCGCTGT 29185 Query 65103 GGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGGTTGAAGAAGCGGGGTC 65161 ||||| ||||| ||||| || ||||| ||| || || | ||| | ||||| || || Sbjct 29186 CGAGGGCATCTTTTTCTCAGGATCATT-TGCTGCAATCTTCTGGCTCAAGAAACGTGGAT 29244 Query 65162 TCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGG 65209 | ||||||||||| ||||| || ||||| ||| | | ||||||| Sbjct 29245 TAATGCCAGGCCTTACATTCTCTAACGAACTCATTAGCAGGGATGAGG 29292 >seq5542 Length=71200 Score = 86.0 bits (94), Expect = 7e-12 Identities = 159/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 64984 CAGTTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATG 65043 || ||||| | |||||| |||| ||||| | | |||||||||| | ||||| || Sbjct 64374 CAATTATTCAACGCCATCGAAACCATACCAGCTGTAAAGAAGAAGGCTGACTGGGCGCTG 64433 Query 65044 AAATGGTTTGAC-ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGT 65102 || ||| | ||| ||||||| | | | | ||| || | | || ||||| ||| Sbjct 64434 AAGTGGATCGACCACAAAGTAGC-CAGGTACAGCGAACGTGTGGTAGCCTTTGCCGCTGT 64492 Query 65103 GGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGGTTGAAGAAGCGGGGTC 65161 ||||| ||||| ||||| || ||||| ||| || || | ||| | ||||| || || Sbjct 64493 CGAGGGCATCTTTTTCTCAGGATCATT-TGCTGCAATCTTCTGGCTCAAGAAACGTGGAT 64551 Query 65162 TCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGG 65209 | ||||||||||| ||||| || ||||| ||| | | ||||||| Sbjct 64552 TAATGCCAGGCCTTACATTCTCTAACGAACTCATTAGCAGGGATGAGG 64599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596408831949920