Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq863 150 3e-31 seq6761 136 7e-27 seq5140 122 2e-22 seq2947 96.9 6e-15 >seq863 Length=118355 Score = 150 bits (166), Expect = 3e-31 Identities = 143/183 (78%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 || ||||||||| || | ||||| ||| ||||| || || || ||||| || | || Sbjct 78269 AACATTATAGTCAGAAAGTGTTCTTTCATCTTCTAACTGATTACCTGCAAAGATAATCCT 78328 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||||||||||||||| |||||||| || ||||| ||||| | |||||| || ||| || Sbjct 78329 CTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATTTTAGATTTTATGTTATCAATGGT 78388 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| || | |||||||| |||||||| |||||||| || || |||| ||||| ||||| Sbjct 78389 ATCTGATGGTTCAACTTCCAGAGTTATTGTTTTACCGGTAAGTTTTTTCACAAAAATTTG 78448 Query 193358 CAT 193360 ||| Sbjct 78449 CAT 78451 Score = 113 bits (124), Expect = 8e-20 Identities = 137/184 (74%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 |||||||||||| || | ||||| || ||||| ||||| ||||||||||| || || Sbjct 78497 AATATTATAGTCAGAAAGTGTTCTTCCATTTTCTAACTGTTTGCCGGCAAAAATAAACCT 78556 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTA-TATTTAAAATAG 193296 |||||||| |||||| |||||||| || ||||| | ||| ||||| | || || | | Sbjct 78557 CTGTTGATTAGGAGGAATTCCTTCCTTGTCTTGAACTTTATATTTTACCACTTCAATTCG 78616 Query 193297 TATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTT 193356 ||| | | |||||| | ||| ||||| ||||||| | | |||| ||||| |||| Sbjct 78617 -ATCTAACGGATCAACTACCAGACTTATATTTTTACCAGACAAGTTTTTCACAAAAATTT 78675 Query 193357 GCAT 193360 ||| Sbjct 78676 CCAT 78679 >seq6761 Length=90290 Score = 136 bits (150), Expect = 7e-27 Identities = 138/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 193181 ATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTG 193240 ||||||||| || | ||||| ||| ||||| || || || |||||||| | ||||| Sbjct 70922 ATTATAGTCAGAAAGTGTTCTTTCATCTTCTAACTGATTACCTGCAAAAATAATCCTCTG 70863 Query 193241 TTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATC 193300 |||||||||||| |||||||| || ||||| |||| | ||||| || || ||||| Sbjct 70862 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATTTGAGATTTTACGTTATCGATGGTATC 70803 Query 193301 GGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || | |||||| |||||||| |||||||| || || ||||| | |||||||||||| Sbjct 70802 TGACGGTACAACTTGCAGAGTTATTGTTTTACCAGTAAGTGTTTTCATAAATATTTGCAT 70743 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 193173 TTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATT 193232 ||| ||||||| || || || | |||| ||| |||| ||||| || |||||||| Sbjct 70702 TTACAAATATTGTACTCAGAAAGTGTTCCTCCATCTGCTAACTGTTTGCCTGCAAAAATA 70643 Query 193233 AATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAA 193292 | | |||| ||||||||||| |||||||| || ||||| ||||| | ||||| | | | Sbjct 70642 ATTGTCTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGAATTTTAGATTTTACCTCTTCA 70583 Query 193293 ATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAAT 193352 || ||| || | |||||||| |||||||| ||||||| | |||| ||||| Sbjct 70582 ATTTGATCCGACAAATCAACTTCCAGAGTTATTTTTTTACCAAAAACTGTTTGCACAAAA 70523 Query 193353 ATTTGCAT 193360 |||| ||| Sbjct 70522 ATTTCCAT 70515 >seq5140 Length=69470 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 193169 CTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAA 193228 ||||||| ||||||| || || | ||| | ||| ||||| ||| | || ||||| Sbjct 7177 CTCTTTACAAATATTGTAACTAGAAAGTGTTTTGTCATCTTCTAACTGTCTACCTGCAAA 7118 Query 193229 AATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATT 193288 || | ||||||||||||||| ||||||||||| ||||| || || | ||||| ||| Sbjct 7117 GATAAGCAGCTGTTGATCAGGAGGAATTCCTTCTTTGTCTTGAATCTTAGATTTTACATT 7058 Query 193289 TAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTAC 193348 | ||| ||||| || ||||| || |||| ||| |||||||| | || |||| ||| Sbjct 7057 TTCAATGGTATCTGACAGTTCAACGTCCAGAGATATTGTTTTACCAGAAAGTGTTTCTAC 6998 Query 193349 AAATATTTGCAT 193360 || |||||||| Sbjct 6997 TAAAATTTGCAT 6986 Score = 109 bits (120), Expect = 1e-18 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 193170 TCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAA 193229 || ||| ||||||| || | | | ||||| ||| ||||| | || || ||||| Sbjct 6492 TCATTACAAATATTGTAATTAAAAAGTGTTCTTCCATCTTCTAACTTCTTACCTGCAAAG 6433 Query 193230 ATTAATCT-CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATT 193288 || || || ||||||||| | ||| ||||||||||| ||||| ||||| ||||| ||| Sbjct 6432 AT-AAGCTGCTGTTGATCCGTAGGAATTCCTTCTTTGTCTTGAATTTTAAATTTTAAATT 6374 Query 193289 TAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTAC 193348 | ||| ||||| | | |||||||| |||| ||| |||||||| || | ||||| || Sbjct 6373 TTCAATGGTATCTGTCGGTTCAACTTCCAGAGATATTGTTTTACCAGTAGGTGTTTTCAC 6314 Query 193349 AAATATTTGCAT 193360 | |||||||| Sbjct 6313 TATCATTTGCAT 6302 Score = 107 bits (118), Expect = 3e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 193169 CTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAA 193228 ||||||| |||| || || || | ||| | ||| ||||| ||| | || ||||| Sbjct 6721 CTCTTTACAAATTTTGTAACTAGAAAGTGTTTTGTCATCTTCTAACTGTCTACCTGCAAA 6662 Query 193229 AATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATT 193288 || | ||||||||||||||| ||||||||||| |||| || || | ||||| || Sbjct 6661 GATAAGCAGCTGTTGATCAGGAGGAATTCCTTCTTTGTCTTCAATCTTAGATTTTACGTT 6602 Query 193289 TAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTAC 193348 ||| ||||| || | |||||||| |||| | | ||| |||| || || ||||| || Sbjct 6601 CTCAATGGTATCTGATGGTTCAACTTCCAGAGATGTTGTTCTACCAGTAAGTGTTTTCAC 6542 Query 193349 AAATATTTGCAT 193360 || |||||||| Sbjct 6541 TAAAATTTGCAT 6530 Score = 104 bits (114), Expect = 4e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 193173 TTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATT 193232 || ||||| || || || || | ||||| || ||||| | ||| || |||| ||| Sbjct 5805 TTCGAAATGTTGTAATCAGAAAGTGTTCTTCCATGTTCTAACTTTTTACCTACAAAGATT 5746 Query 193233 AATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAA 193292 | | |||||||| | ||| ||||||||||| ||||| ||||| ||||| ||| | Sbjct 5745 AGCCGCTGTTGATTCGTAGGAATTCCTTCTTTGTCTTGAATTTTAAATTTTACTTTTTCA 5686 Query 193293 ATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAAT 193352 || ||||| || | ||||||| ||||||| |||| ||| || | ||||| || || Sbjct 5685 ATGGTATCTGACGGTTCAACTTTCAGAGTTAATGTTTCACCAGTAGGTGTTTTCACTAAA 5626 Query 193353 ATTTGCA 193359 ||||||| Sbjct 5625 ATTTGCA 5619 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 193236 CTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATA 193295 || |||||||| ||| | |||||||| || ||||| ||||| ||||| ||| ||| Sbjct 7338 CTTTGTTGATCGGGAAGAATTCCTTCCTTGTCTTGAATTTTTAATTTTACGTTTTCAATG 7279 Query 193296 GTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATT 193355 |||| || | |||||||||||||| || ||| |||| || | ||||| |||| ||| Sbjct 7278 GTATGTGATGGTTCAACTTCTAGAGTGATTGTTCTACCAGTAGGTGTTTTCGCAAAAATT 7219 Query 193356 TGCAT 193360 ||||| Sbjct 7218 TGCAT 7214 Score = 89.7 bits (98), Expect = 9e-13 Identities = 98/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCT-CTGTTGATCAGGAGGTATTCCTTCTT 193263 ||| ||||| ||||| || ||||| || || || ||||||||||||||| |||||||||| Sbjct 4307 ATCTTCTAACTGTTTACCTGCAAAGAT-AAGCTGCTGTTGATCAGGAGGAATTCCTTCTT 4249 Query 193264 TATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTA 193323 | | ||| || | | ||||| |||| ||| ||||| || | ||||||| || ||| Sbjct 4248 TGTTTTGAATCATAGATTTTACATTTTCAATGGTATCTGACGGATCAACTTTGAGCTTTA 4189 Query 193324 TAGTTTTA 193331 | ||| || Sbjct 4188 TGGTTCTA 4181 >seq2947 Length=87168 Score = 96.9 bits (106), Expect = 6e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | ||||| || ||||| | ||| | |||||| || || |||||| Sbjct 53159 ATACCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCG 53218 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 ||||| ||||| || |||| |||||| || || || || | | ||| || || || Sbjct 53219 GATAATGTTCTTCCGTCCTCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGG 53278 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || ||||||| ||| | ||| || || || | || Sbjct 53279 GGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCT 53338 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || || || || || || || ||||| ||||| || ||||| || Sbjct 53339 ACCTCAAGGGTGATGGTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCATGTT 53391 Score = 86.0 bits (94), Expect = 1e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || ||||| | ||| | |||||| || || ||||||||||||||||| Sbjct 52946 CGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCG 53005 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || || ||||| || | | ||| || || || || || ||||| || Sbjct 53006 TCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTG 53065 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||||| ||| | ||| || || || | || || || || || || Sbjct 53066 TCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATG 53125 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||| ||||| || ||||| Sbjct 53126 GTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 53160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899411954384880