Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq6761 154 3e-32 seq863 145 2e-29 seq5140 141 2e-28 seq2947 109 1e-18 seq1283 91.5 3e-13 >seq6761 Length=90290 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378 || ||||| || | ||| | ||| ||| || | |||||| ||||| | ||||| | Sbjct 70960 AGTCGTAAGACAAGATGCAGAGTGCTCTCGTTCTGTACATTATAGTCAGAAAGTGTTCTT 70901 Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 ||||| || || || ||||| ||||| || | |||||||||||||| || |||||||| Sbjct 70900 TCATCTTCTAACTGATTACCTGCAAAAATAATCCTCTGTTGATCAGGAGGAATTCCTTCC 70841 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 || ||||| |||| | |||||| ||| || | |||||||| | | |||| ||||| Sbjct 70840 TTGTCTTGAATTTGAGATTTTACGTTATCGATGGTATCTGACGGTACAACTTGCAGAGTT 70781 Query 192499 ATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||||||||| | |||||| |||||||| ||||| Sbjct 70780 ATTGTTTTACCAGTAAGTGTTTTCATAAATATTTGCAT 70743 Score = 84.2 bits (92), Expect = 4e-11 Identities = 116/161 (72%), Gaps = 5/161 (3%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| |||||| | ||||| |||||||| | |||| | | ||| | |||| |||| | Sbjct 26780 ATACCTCCTCTATGCCGTAACACTAAATGAACAGTATTCCCCTTACA--TATTGTAATTA 26837 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| ||| || | |||||||| ||||| || | ||||| ||||||| Sbjct 26838 GAAAGTGTTTTACCATATTCTTACTGTTTACCTGCAAATATAAGCCTCTGATGATCAGAA 26897 Query 192427 GGT---ATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464 || ||||||||||| | ||| || || ||||||||| Sbjct 26898 GGAGAAATTCCTTCTTTGTTTTGAATCATAGATTTTACATT 26938 >seq863 Length=118355 Score = 145 bits (160), Expect = 2e-29 Identities = 140/180 (78%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 192357 ATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTG 192416 |||||| ||||| | ||||| |||||| || || || ||||| |||||||| | ||||| Sbjct 78272 ATTATAGTCAGAAAGTGTTCTTTCATCTTCTAACTGATTACCTGCAAAGATAATCCTCTG 78331 Query 192417 TTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATC 192476 ||||||||| || |||||||| || ||||| |||||| ||||| ||| || | ||| Sbjct 78332 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATTTTAGATTTTATGTTATCAATGGTATC 78391 Query 192477 TGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| | ||| ||||| ||||| || |||||||| || | | |||| | ||| || ||||| Sbjct 78392 TGATGGTTCAACTTCCAGAGTTATTGTTTTACCGGTAAGTTTTTTCACAAAAATTTGCAT 78451 >seq5140 Length=69470 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378 || ||||| || ||||| | ||| ||| ||| | ||||| |||||||| | ||||| | Sbjct 6291 AGCCGTAAAACCAAATGAACAGTGCTCTCCTTACAAATATTGTAATCAGAAAGTGTTCTT 6232 Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 ||| || || |||||||| ||||||||| | ||||||||| || ||||||| | Sbjct 6231 CCATGTTCTAACTGTTTACCTACAAAGATTAGCCGCTGTTGATCCATAGGAATTCCTTTT 6172 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 || ||||| |||||| ||||| ||| || | ||||| || ||| ||||| |||| Sbjct 6171 TTGTCTTGAATTTTAAATTTTAAATTTTCAATGGTATCTGTCGGTTCAACTTCCAGAGAT 6112 Query 192499 ATGGTTTTACCAGTTAATGTTTT 192521 || ||||||||||||| |||||| Sbjct 6111 ATTGTTTTACCAGTTAGTGTTTT 6089 Score = 134 bits (148), Expect = 3e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | || ||||| || || || | ||| ||||||| | ||||| ||| | Sbjct 7215 ATACCTCCCTTGAGCCGTAACACCAACTGAACAGTGCTCTCTTTACAAATATTGTAACTA 7156 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| ||||| || || ||| |||| |||||||| | |||||||||||| Sbjct 7155 GAAAGTGTTTTGTCATCTTCTAACTGTCTACCTGCAAAGATAAGCAGCTGTTGATCAGGA 7096 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| || ||| ||||||||| || | ||||||| ||| Sbjct 7095 GGAATTCCTTCTTTGTCTTGAATCTTAGATTTTACATTTTCAATGGTATCTGACAGTTCA 7036 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTT-TAATAAATATCTGCAT 192536 || || |||| || |||||||||| | ||||| || |||| || ||||| Sbjct 7035 ACGTCCAGAGATATTGTTTTACCAGAAAGTGTTTCTACTAAA-ATTTGCAT 6986 Score = 129 bits (142), Expect = 1e-24 Identities = 165/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 192313 CCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAAT 192372 ||||| || ||||| |||| || | ||| ||||||| | ||||| ||| ||| | | Sbjct 6981 CCTCTGAGCCGTAACGCTAACTGAACAGTGCTCTCTTTACAAATATTGTAACTAGAAAGT 6922 Query 192373 GTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT-CTGTTGATCAGGTGGTAT 192431 ||| ||||| || || ||| |||| |||||||| || || |||||||| ||| || || Sbjct 6921 GTTTTGTCATCTTCTAACTGTCTACCTGCAAAGAT-AAGCTGCTGTTGATGAGGAGGAAT 6863 Query 192432 TCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTC 192491 |||| |||| ||||| || ||| ||||| || || | |||||||| ||| ||||| Sbjct 6862 TCCTGCTTTGTCTTGAATCTTAGATTTTAAGTTTTCAATGGTATCTGACGGTTCAACTTC 6803 Query 192492 TAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||| || ||||||||||| ||||| | || || ||||| Sbjct 6802 CAGAGATATTGTTTTACCAGTAGGTGTTTCCACGAAAATTTGCAT 6758 Score = 125 bits (138), Expect = 1e-23 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 192313 CCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAAT 192372 ||||| || ||||| || || || | ||| ||||||| | || || ||| ||| | | Sbjct 6753 CCTCTGAGCCGTAACACCAACTGAACAGTGCTCTCTTTACAAATTTTGTAACTAGAAAGT 6694 Query 192373 GTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATT 192432 ||| ||||| || || ||| |||| |||||||| | |||||||||||| || ||| Sbjct 6693 GTTTTGTCATCTTCTAACTGTCTACCTGCAAAGATAAGCAGCTGTTGATCAGGAGGAATT 6634 Query 192433 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCT 192492 |||||||| |||| || ||| |||||| || || | |||||| | ||| ||||| Sbjct 6633 CCTTCTTTGTCTTCAATCTTAGATTTTACGTTCTCAATGGTATCTGATGGTTCAACTTCC 6574 Query 192493 AGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||| | ||| ||||||| | |||||| | || || ||||| Sbjct 6573 AGAGATGTTGTTCTACCAGTAAGTGTTTTCACTAAAATTTGCAT 6530 Score = 123 bits (136), Expect = 5e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 192313 CCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAAT 192372 ||||| || |||| || ||||| | ||| || ||| | ||||| |||| | | | | Sbjct 6525 CCTCTGAGCCGTATCACCAAATGAACAGTGCTTTCATTACAAATATTGTAATTAAAAAGT 6466 Query 192373 GTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT-CTGTTGATCAGGTGGTAT 192431 |||| | |||| || || | ||||| |||||||| || || ||||||||| | || || Sbjct 6465 GTTCTTCCATCTTCTAACTTCTTACCTGCAAAGAT-AAGCTGCTGTTGATCCGTAGGAAT 6407 Query 192432 TCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTC 192491 ||||||||| ||||| |||||| ||||| ||| || | ||||| || ||| ||||| Sbjct 6406 TCCTTCTTTGTCTTGAATTTTAAATTTTAAATTTTCAATGGTATCTGTCGGTTCAACTTC 6347 Query 192492 TAGAGTAATGGTTTTACCAGTTAATGTTTT 192521 |||| || ||||||||||| |||||| Sbjct 6346 CAGAGATATTGTTTTACCAGTAGGTGTTTT 6317 Score = 118 bits (130), Expect = 2e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 192313 CCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAAT 192372 ||| | || ||||| || |||| | ||| || || || || || |||||||| | | Sbjct 5841 CCTTTGAGCCGTAACACCAAATAAACAGTGCTCTTATTCGAAATGTTGTAATCAGAAAGT 5782 Query 192373 GTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATT 192432 |||| | ||| || || | |||||| ||||||||| | |||||||| | || ||| Sbjct 5781 GTTCTTCCATGTTCTAACTTTTTACCTACAAAGATTAGCCGCTGTTGATTCGTAGGAATT 5722 Query 192433 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCT 192492 |||||||| ||||| |||||| |||||| || || | |||||||| ||| |||| Sbjct 5721 CCTTCTTTGTCTTGAATTTTAAATTTTACTTTTTCAATGGTATCTGACGGTTCAACTTTC 5662 Query 192493 AGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCA 192535 ||||| | |||| |||||| |||||| | || || |||| Sbjct 5661 AGAGTTAATGTTTCACCAGTAGGTGTTTTCACTAAAATTTGCA 5619 Score = 102 bits (112), Expect = 2e-16 Identities = 134/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 192349 TTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATT 192408 || || ||||| ||| ||| | |||| ||||| || || |||||||| |||||||| Sbjct 4339 TTCGAAATATTGTAACTAGAAAGTGTTTTGTCATCTTCTAACTGTTTACCTGCAAAGAT- 4281 Query 192409 AATCT-CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGT 192467 || || |||||||||||| || ||||||||||| | ||| || || ||||||||| Sbjct 4280 AAGCTGCTGTTGATCAGGAGGAATTCCTTCTTTGTTTTGAATCATAGATTTTACATTTTC 4221 Query 192468 TATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAA 192527 || | |||||||| || |||| || | |||||| || || |||||| | | ||| Sbjct 4220 AATGGTATCTGACGGATCAACTTTGAGCTTTATGGTTCTATCAACCAATGTTCTCACAAA 4161 Query 192528 TAT 192530 || Sbjct 4160 AAT 4158 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 192322 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCA 192381 ||||| || | ||| | ||| ||| || |||||||| ||||| | |||| | || Sbjct 7431 CGTAAGACAAGATGCAGAGTGCTCTCCTTCTGTATATTATAGTCAGAAAGTGTTGTTCCA 7372 Query 192382 TCATCCAATTGTTTACCAGC---AAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 || || || | | || | | ||||| | || |||||||| || | |||||||| Sbjct 7371 TCTTCGAACAGCTGACGACCTTTAAAGACAAGCCTTTGTTGATCGGGAAGAATTCCTTCC 7312 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 || ||||| ||||| |||||| || || | || ||| | ||| ||||||||||| Sbjct 7311 TTGTCTTGAATTTTTAATTTTACGTTTTCAATGGTATGTGATGGTTCAACTTCTAGAGTG 7252 Query 192499 ATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||| ||||||| |||||| ||| || ||||| Sbjct 7251 ATTGTTCTACCAGTAGGTGTTTTCGCAAAAATTTGCAT 7214 >seq2947 Length=87168 Score = 109 bits (120), Expect = 1e-18 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || | ||| | || | |||||| ||| || || || Sbjct 53159 ATACCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCG 53218 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||||| | | || || | |||||||||||| ||||| | | ||| || || || Sbjct 53219 GATAATGTTCTTCCGTCCTCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGG 53278 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || ||||| ||| ||||| || | || | |||| Sbjct 53279 GGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCT 53338 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || ||||| || ||||| | |||||| | ||| |||||||| || Sbjct 53339 ACCTCAAGGGTGATGGTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCATGTT 53391 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | ||||| | || | ||| | || | |||||| ||| || || || ||| Sbjct 52934 CCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGAT 52993 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || |||| | | || || | || |||||||||||||| | | ||| || || ||||| Sbjct 52994 AACGTTCTTCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGA 53053 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || || || ||||| ||| ||||| || | || | |||||| Sbjct 53054 ATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACC 53113 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || ||||| | ||||| | ||| |||||||| Sbjct 53114 TCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 53160 >seq1283 Length=128015 Score = 91.5 bits (100), Expect = 3e-13 Identities = 118/161 (73%), Gaps = 4/161 (2%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| |||||| | ||||| |||||||| | |||| | | ||| | ||||| |||| | Sbjct 30101 ATACCTCCTCTATGCCGTAACACTAAATGAACAGTATTCCCCTTACA-ATATTGTAATTA 30159 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||||| ||| || | |||||||| ||||| || | ||||| ||||||| Sbjct 30160 GAAAGTGTTCTACCATATTCTTACTGTTTACCTGCAAATATAAGCCTCTGATGATCAGAA 30219 Query 192427 GGT---ATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464 || ||||||||||| | ||| || || ||||||||| Sbjct 30220 GGAGAAATTCCTTCTTTGTTTTGAATCATAGATTTTACATT 30260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984208062319650