Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq6761 141 2e-28 seq5140 123 5e-23 seq2947 96.9 6e-15 >seq6761 Length=90290 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 171852 AGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGT 171911 |||||||| || | ||| | ||| ||| || | |||||| || || | | || | Sbjct 70960 AGTCGTAAGACAAGATGCAGAGTGCTCTCGTTCTGTACATTATAGTCAGAAAGTGTTCTT 70901 Query 171912 TCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCT 171971 || || || || || ||||| |||||||| | |||||||| ||||| || |||||||| Sbjct 70900 TCATCTTCTAACTGATTACCTGCAAAAATAATCCTCTGTTGATCAGGAGGAATTCCTTCC 70841 Query 171972 TTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTA 172031 || ||||| |||| | |||||| ||| || |||||||||| | | |||| ||||| Sbjct 70840 TTGTCTTGAATTTGAGATTTTACGTTATCGATGGTATCTGACGGTACAACTTGCAGAGTT 70781 Query 172032 ATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||||||||| | |||||| || ||||| ||||| Sbjct 70780 ATTGTTTTACCAGTAAGTGTTTTCATAAATATTTGCAT 70743 >seq5140 Length=69470 Score = 123 bits (136), Expect = 5e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 171852 AGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGT 171911 || ||||| || ||||| | ||| ||| ||| ||||||| ||||| || | | || | Sbjct 6291 AGCCGTAAAACCAAATGAACAGTGCTCTCCTTACAAATATTGTAATCAGAAAGTGTTCTT 6232 Query 171912 TCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCT 171971 | | || || |||||||| |||| |||| | |||||| || || ||||||| | Sbjct 6231 CCATGTTCTAACTGTTTACCTACAAAGATTAGCCGCTGTTGATCCATAGGAATTCCTTTT 6172 Query 171972 TTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTA 172031 || ||||| |||||| ||||| ||| || ||||||| || ||| ||||| |||| Sbjct 6171 TTGTCTTGAATTTTAAATTTTAAATTTTCAATGGTATCTGTCGGTTCAACTTCCAGAGAT 6112 Query 172032 ATGGTTTTACCAGTTAATGTTTT 172054 || ||||||||||||| |||||| Sbjct 6111 ATTGTTTTACCAGTTAGTGTTTT 6089 Score = 116 bits (128), Expect = 7e-21 Identities = 167/228 (73%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 171846 CCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAA 171905 ||||| || ||||| |||| || | ||| ||||||| ||||||| ||| || | ||| Sbjct 6981 CCTCTGAGCCGTAACGCTAACTGAACAGTGCTCTCTTTACAAATATTGTAA-CT-AGAAA 6924 Query 171906 GATCGTTCGTCATCC---AATTGTTTACCAGCAAAAATTAATCT-CTGTTGGTCAGGTGG 171961 | | || |||||| || ||| |||| ||||| || || || |||||| | ||| || Sbjct 6923 G-TGTTTTGTCATCTTCTAACTGTCTACCTGCAAAGAT-AAGCTGCTGTTGATGAGGAGG 6866 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||| |||| ||||| || ||| ||||| || || |||||||||| ||| || Sbjct 6865 AATTCCTGCTTTGTCTTGAATCTTAGATTTTAAGTTTTCAATGGTATCTGACGGTTCAAC 6806 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| |||| || ||||||||||| ||||| | ||| || ||||| Sbjct 6805 TTCCAGAGATATTGTTTTACCAGTAGGTGTTTCCACGAAAATTTGCAT 6758 Score = 114 bits (126), Expect = 2e-20 Identities = 168/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | || ||||| || || || | ||| ||||||| ||||||| ||| || Sbjct 7215 ATACCTCCCTTGAGCCGTAACACCAACTGAACAGTGCTCTCTTTACAAATATTGTAA-CT 7157 Query 171900 GATAAAGATCGTTCGTCATCC---AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 | |||| | || |||||| || ||| |||| ||||| || | |||||| ||| Sbjct 7156 -AGAAAG-TGTTTTGTCATCTTCTAACTGTCTACCTGCAAAGATAAGCAGCTGTTGATCA 7099 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || ||||||||||| ||||| || ||| ||||||||| || ||||||||| | Sbjct 7098 GGAGGAATTCCTTCTTTGTCTTGAATCTTAGATTTTACATTTTCAATGGTATCTGACAGT 7039 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || |||| || |||||||||| | ||||| | || || ||||| Sbjct 7038 TCAACGTCCAGAGATATTGTTTTACCAGAAAGTGTTTCTACTAAAATTTGCAT 6986 Score = 109 bits (120), Expect = 1e-18 Identities = 163/227 (72%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 171846 CCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAA 171905 ||||| || ||||| || || || | ||| ||||||| |||| || ||| || | ||| Sbjct 6753 CCTCTGAGCCGTAACACCAACTGAACAGTGCTCTCTTTACAAATTTTGTAA-CT-AGAAA 6696 Query 171906 GATCGTTCGTCATCC---AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | || |||||| || ||| |||| ||||| || | |||||| ||||| || Sbjct 6695 G-TGTTTTGTCATCTTCTAACTGTCTACCTGCAAAGATAAGCAGCTGTTGATCAGGAGGA 6637 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 ||||||||||| |||| || ||| |||||| || || |||||||| | ||| ||| Sbjct 6636 ATTCCTTCTTTGTCTTCAATCTTAGATTTTACGTTCTCAATGGTATCTGATGGTTCAACT 6577 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| | ||| ||||||| | |||||| | || || ||||| Sbjct 6576 TCCAGAGATGTTGTTCTACCAGTAAGTGTTTTCACTAAAATTTGCAT 6530 Score = 105 bits (116), Expect = 1e-17 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 171846 CCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAA 171905 ||||| || |||| || ||||| | ||| || ||| ||||||| |||| | | Sbjct 6525 CCTCTGAGCCGTATCACCAAATGAACAGTGCTTTCATTACAAATATTGTAATTAAAAAGT 6466 Query 171906 GATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT-CTGTTGGTCAGGTGGTAT 171964 | || | | || || || | ||||| ||||| || || || |||||| || | || || Sbjct 6465 GTTCTTCCATCTTCTAACTTCTTACCTGCAAAGAT-AAGCTGCTGTTGATCCGTAGGAAT 6407 Query 171965 TCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTC 172024 ||||||||| ||||| |||||| ||||| ||| || ||||||| || ||| ||||| Sbjct 6406 TCCTTCTTTGTCTTGAATTTTAAATTTTAAATTTTCAATGGTATCTGTCGGTTCAACTTC 6347 Query 172025 TAGAGTAATGGTTTTACCAGTTAATGTTTT 172054 |||| || ||||||||||| |||||| Sbjct 6346 CAGAGATATTGTTTTACCAGTAGGTGTTTT 6317 Score = 100 bits (110), Expect = 5e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 171846 CCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAA 171905 ||| | || ||||| || |||| | ||| || || ||||| || ||||| || | Sbjct 5841 CCTTTGAGCCGTAACACCAAATAAACAGTGCTCTTATTCGAAATGTTGTAATCAGAAAGT 5782 Query 171906 GATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATT 171965 | || | | | || || | |||||| |||| |||| | |||||| | | || ||| Sbjct 5781 GTTCTTCCATGTTCTAACTTTTTACCTACAAAGATTAGCCGCTGTTGATTCGTAGGAATT 5722 Query 171966 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCT 172025 |||||||| ||||| |||||| |||||| || || |||||||||| ||| |||| Sbjct 5721 CCTTCTTTGTCTTGAATTTTAAATTTTACTTTTTCAATGGTATCTGACGGTTCAACTTTC 5662 Query 172026 AGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCA 172068 ||||| | |||| |||||| |||||| | || || |||| Sbjct 5661 AGAGTTAATGTTTCACCAGTAGGTGTTTTCACTAAAATTTGCA 5619 Score = 84.2 bits (92), Expect = 4e-11 Identities = 128/175 (73%), Gaps = 8/175 (5%) Strand=Plus/Minus Query 171882 TTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC---AATTGTTTACCAGCAAAA 171938 || |||||||| ||| || | |||| | || |||||| || |||||||| ||||| Sbjct 4339 TTCGAAATATTGTAA-CT-AGAAAG-TGTTTTGTCATCTTCTAACTGTTTACCTGCAAAG 4283 Query 171939 ATTAATCT-CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 171997 || || || |||||| ||||| || ||||||||||| | ||| || || ||||||||| Sbjct 4282 AT-AAGCTGCTGTTGATCAGGAGGAATTCCTTCTTTGTTTTGAATCATAGATTTTACATT 4224 Query 171998 AGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052 || |||||||||| || |||| || | |||||| || || |||||| Sbjct 4223 TTCAATGGTATCTGACGGATCAACTTTGAGCTTTATGGTTCTATCAACCAATGTT 4169 >seq2947 Length=87168 Score = 96.9 bits (106), Expect = 6e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || | ||| | || | |||||| || || || || Sbjct 53159 ATACCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCG 53218 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | |||| || | |||||||||||| || || | | ||| ||||| || Sbjct 53219 GATAATGTTCTTCCGTCCTCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGG 53278 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || ||||| ||| ||||| || || || | |||| Sbjct 53279 GGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCT 53338 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || || ||||| || ||||| | |||||| | || |||||||| || Sbjct 53339 ACCTCAAGGGTGATGGTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCATGTT 53391 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || || || ||||| | || | |||| || | || ||||||||||| || | | | Sbjct 52979 ATGTTGTAGTCGGATAACGTTCTTCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGC 53038 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| ||||| || ||||| || || || ||||| ||| ||||| || || Sbjct 53039 TGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTG 53098 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || | |||||| || || || ||||| || ||||| | ||||| | || |||||| Sbjct 53099 TCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGC 53158 Query 172068 AT 172069 || Sbjct 53159 AT 53160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904892077162200