Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2947 102 7e-17 seq863 96.9 3e-15 seq5140 82.4 7e-11 >seq2947 Length=87168 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || || || |||||| | | Sbjct 53160 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 53101 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| || ||||| ||||| ||||| || || || || || Sbjct 53100 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 53041 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || ||||| ||||| |||| | || || || ||| Sbjct 53040 CAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGACGGAAGAACGTTATCCGACTACAAC 52981 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || || || || ||||| || |||| Sbjct 52980 ATCCAGAAAGAGTCCACACTCCATCTTG 52953 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || || || |||||| | | Sbjct 53388 ATGCAGATCTTTGTCAAAACACTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 53329 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| || ||||| ||||| ||||| || || || || || Sbjct 53328 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCCCCAGACCAG 53269 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || ||||| || ||||| |||| | || || || ||| Sbjct 53268 CAGCGTCTCATCTTCGCTGGTAAACAACTAGAGGACGGAAGAACATTATCCGACTACAAC 53209 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || || || || ||||| || |||| Sbjct 53208 ATCCAGAAAGAGTCCACACTCCATCTTG 53181 >seq863 Length=118355 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | |||| || ||||||||||| || || || ||||| ||| | | Sbjct 78451 ATGCAAATTTTTGTGAAAAAACTTACCGGTAAAACAATAACTCTGGAAGTTGAACCATCA 78392 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | ||||| || || |||||||| |||||||| ||||| |||||| Sbjct 78391 GATACCATTGATAACATAAAATCTAAAATTCAAGACAAGGAAGGAATTCCTCCTGATCAA 78332 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || || ||| | || ||| |||| | || || ||||| Sbjct 78331 CAGAGGATTATCTTTGCAGGTAATCAGTTAGAAGATGAAAGAACACTTTCTGACTATAAT 78272 Query 24884 ATTCAAAAGGA 24894 |||| ||||| Sbjct 78271 GTTCAGAAGGA 78261 >seq5140 Length=69470 Score = 82.4 bits (90), Expect = 7e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| || || ||| |||| | ||||| ||||| ||| | | Sbjct 5846 ATGCAAATTTTAGTGAAAACACTTACTGGTGAAACATTAACGCTGGAAGTTGAACCGTCA 5905 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| |||||| | ||| |||||||||||| |||| ||| | |||||| Sbjct 5906 GATACCATTGAAAATGTAAAATCTATGATTCAAGACAAAGAAAGAATTCCTACGGATCAA 5965 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || || || | || ||| |||| | || |||| ||| Sbjct 5966 CAGCAGCTTATCTTTGCAGGTAAGAAGTTAGAAGATGGAAGAACACTTTCTAATTACAAC 6025 Query 24884 ATT 24886 ||| Sbjct 6026 ATT 6028 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTA-AAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||| || |||| || |||| || | |||||||| || | || || || ||| | Sbjct 6986 ATGCAAAT-TTTAGTAGAAACACTTTCTGGTAAAACAATATCTCTGGACGTTGAACTGTC 7044 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| |||||| ||||| ||||||||||||||||| ||||| ||||| Sbjct 7045 AGATACCATTGAAAATGTAAAATCTAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCA 7104 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 ||| | | |||||||| || | |||| | || ||| Sbjct 7105 ACAGCTGCTTATCTTTGCAGGTAGACAGTTAGAAGAT 7141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449776358220520