Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq9509 98.7 2e-14 seq5542 98.7 2e-14 >seq9509 Length=48202 Score = 98.7 bits (108), Expect = 2e-14 Identities = 137/188 (73%), Gaps = 13/188 (7%) Strand=Plus/Minus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTG--CCCGAGA 794434 ||||| ||||| | || || ||||||||||| ||||| ||| | || || || |||| Sbjct 29257 AGGCCTGGCATTAATCCACGTTTCTTGAGCCAGAAGATTGCA--GCAAATGATCCTGAGA 29200 Query 794435 AAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGT-CCAGGC-- 794491 |||||||||||||||| ||||||||| | || | || ||| ||| || ||| Sbjct 29199 AAAAGATGCCCTCGACAGCGGCAAAGGCTACCACACGTTCG------CTGTACCTGGCTA 29146 Query 794492 CCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGT 794551 | | | || ||||||||||| |||||| || ||||| ||| | || | || | || | Sbjct 29145 CTTTGTGGTCGATCCACTTCAGCGCCCAGTCAGCCTTCTTCTTTACAGCTGGTATGGTTT 29086 Query 794552 CGATGGCG 794559 |||||||| Sbjct 29085 CGATGGCG 29078 >seq5542 Length=71200 Score = 98.7 bits (108), Expect = 2e-14 Identities = 137/188 (73%), Gaps = 13/188 (7%) Strand=Plus/Minus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTG--CCCGAGA 794434 ||||| ||||| | || || ||||||||||| ||||| ||| | || || || |||| Sbjct 64564 AGGCCTGGCATTAATCCACGTTTCTTGAGCCAGAAGATTGCA--GCAAATGATCCTGAGA 64507 Query 794435 AAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGT-CCAGGC-- 794491 |||||||||||||||| ||||||||| | || | || ||| ||| || ||| Sbjct 64506 AAAAGATGCCCTCGACAGCGGCAAAGGCTACCACACGTTCG------CTGTACCTGGCTA 64453 Query 794492 CCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGT 794551 | | | || ||||||||||| |||||| || ||||| ||| | || | || | || | Sbjct 64452 CTTTGTGGTCGATCCACTTCAGCGCCCAGTCAGCCTTCTTCTTTACAGCTGGTATGGTTT 64393 Query 794552 CGATGGCG 794559 |||||||| Sbjct 64392 CGATGGCG 64385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913953070839401