Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2947 107 1e-18 >seq2947 Length=87168 Score = 107 bits (118), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| ||| ||||| ||||| ||||| |||| | | | || Sbjct 53177 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCC 53236 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || || |||||||| || || ||||||||| | || | || |||||||| Sbjct 53237 TCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCC 53296 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| |||||| || || || | ||| | | || || |||| ||| |||| Sbjct 53297 TGGATTTTGGATTTGAC--ATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGG 53354 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || || || || || ||||||||||||||| Sbjct 53355 TCTTGCCAGTCAGTGTTTTGACAAAGATCTGCATG 53389 Score = 102 bits (112), Expect = 5e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| ||| ||||| ||||| ||||| |||| | | | || Sbjct 52949 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCC 53008 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||| || || ||||||||| | || | || |||||||| Sbjct 53009 TCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCC 53068 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| |||||| || || || | ||| | | || || |||| ||| |||| Sbjct 53069 TGGATTTTGGATTTGAC--ATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGG 53126 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || || || || |||||||||||||| Sbjct 53127 TCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 53160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325607224115021