Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq6761 114 2e-20 seq863 104 4e-17 seq5140 96.9 5e-15 >seq6761 Length=90290 Score = 114 bits (126), Expect = 2e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| || |||||| | || || |||||||| ||| | | || | || | Sbjct 70744 TGCAAATATTTATGAAAACACTTACTGGTAAAACAATAACTCTGCAAGTTGTACCGTCAG 70803 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | || |||||| | |||| ||| || ||||| ||||| || ||||||| Sbjct 70804 ATACCATCGATAACGTAAAATCTCAAATTCAAGACAAGGAAGGAATTCCTCCTGATCAAC 70863 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | |||||||||||||| || ||||| ||| | ||||| | | || |||||| Sbjct 70864 AGAGGATTATTTTTGCAGGTAATCAGTTAGAAGATGAAAGAACACTTTCTGACTATAATG 70923 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTA 146249 |||| || || ||| | ||| | || |||||| || Sbjct 70924 TACAGAACGAGAGCACTCTGCATCTTGTCTTACGACTA 70961 >seq863 Length=118355 Score = 104 bits (114), Expect = 4e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| || | |||| | | || || |||||||| ||| | || || |||| || | Sbjct 78450 TGCAAATTTTTGTGAAAAAACTTACCGGTAAAACAATAACTCTGGAAGTTGAACCATCA- 78392 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | || ||||| |||||| ||| || ||||| ||||| || |||||| Sbjct 78391 GATACCATTGATAACATAAAATCTAAAATTCAAGACAAGGAAGGAATTCCTCCTGATCAA 78332 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || | || ||||||||||| || ||||| ||| | ||||| | | || |||||| Sbjct 78331 CAGAGGATTATCTTTGCAGGTAATCAGTTAGAAGATGAAAGAACACTTTCTGACTATAAT 78272 Query 146211 ATACAAAAAGA 146221 | || || || Sbjct 78271 GTTCAGAAGGA 78261 >seq5140 Length=69470 Score = 96.9 bits (106), Expect = 5e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || || ||||| | | || |||||||| || | || || |||| | Sbjct 6987 TGCAAATTTTAGTAGAAACACTTTCTGGTAAAACAATATCTCTGGACGTTGAACTGTCAG 7046 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||||||| ||| || ||| |||||||| ||||| || ||||||| Sbjct 7047 ATACCATTGAAAATGTAAAATCTAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAAC 7106 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAAC 146194 | || || |||||||||| ||| ||||| ||| | | ||| Sbjct 7107 AGCTGCTTATCTTTGCAGGTAGACAGTTAGAAGATGACAAAAC 7149 Score = 89.7 bits (98), Expect = 8e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| | | |||||| || || |||||||| || | || || |||| | | Sbjct 6303 TGCAAATGATAGTGAAAACACCTACTGGTAAAACAATATCTCTGGAAGTTGAACCGACAG 6362 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||| ||||| |||||| ||| |||||||| ||||| | ||||||| Sbjct 6363 ATACCATTGAAAATTTAAAATTTAAAATTCAAGACAAAGAAGGAATTCCTACGGATCAAC 6422 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || ||||||||||| | ||||| ||| ||||| | |||| |||| Sbjct 6423 AGCAGCTTATCTTTGCAGGTAAGAAGTTAGAAGATGGAAGAACACTTTTTAATTACAATA 6482 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGA 146255 | || ||| ||| | ||||| || |||| | |||||| Sbjct 6483 TTTGTAATGAAAGCACTGTTCATTTGGTGATACGGCTCAGAGGA 6526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785954537982280