Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2947 143 5e-29 seq863 132 9e-26 seq6761 127 4e-24 seq5140 113 9e-20 seq1283 84.2 4e-11 >seq2947 Length=87168 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | || || || || |||||||| || || || || | Sbjct 53160 TACCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGG 53219 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| |||| ||||| ||||||||||| ||||| ||||| || | || || ||||| | Sbjct 53220 ATAATGTTCTTCCGTCCTCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGGG 53279 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || || || | ||| ||||| || || || ||| | ||||||| Sbjct 53280 GAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTA 53339 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||| |||| || || ||||| |||||||| Sbjct 53340 CCTCAAGGGTGATGGTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCAT 53388 Score = 132 bits (146), Expect = 9e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | || || || || |||||||| || || || || |||| |||| || Sbjct 52945 ACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCC 53004 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || ||||||||||| || | || || ||||| || || |||||||| Sbjct 53005 GTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTT 53064 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || || || | ||| ||||| || || || ||| | |||||||| || | || || Sbjct 53065 GTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGAT 53124 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| || || ||||| |||||||| Sbjct 53125 GGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 53160 >seq863 Length=118355 Score = 132 bits (146), Expect = 9e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 || ||||| | |||||| ||||| || |||| | ||||||| || || || |||||| Sbjct 78261 TCCTTCTGAACATTATAGTCAGAAAGTGTTCTTTCATCTTCTAACTGATTACCTGCAAAG 78320 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 || | || |||||||| ||||| ||||||||||| |||||||| || | ||||| || Sbjct 78321 ATAATCCTCTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATTTTAGATTTTATGTTA 78380 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799 ||||| ||||| ||||| ||||||| |||||| || || || || | | || ||| Sbjct 78381 TCAATGGTATCTGATGGTTCAACTTCCAGAGTTATTGTTTTACCGGTAAGTTTTTTCACA 78440 Query 82800 AATATCTGCAT 82810 || || ||||| Sbjct 78441 AAAATTTGCAT 78451 Score = 93.3 bits (102), Expect = 8e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| | || | |||| || | ||| | | ||| |||||||| |||| Sbjct 78451 TACCTCCTCTAAGCCGTAACACTATATGAATAGTGCTCTTCTGCTGAATATTATAGTCAG 78510 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || |||| || | ||||| ||||| || ||||| || | || ||||||| |||| Sbjct 78511 AAAGTGTTCTTCCATTTTCTAACTGTTTGCCGGCAAAAATAAACCTCTGTTGATTAGGAG 78570 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| ||||||| || |||||| |||||| ||| || || | Sbjct 78571 GAATTCCTTCCTTGTCTTGAACTTTATATTTTACCACTTCAATTCGATCTAACGGATCAA 78630 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||| | |||| | || || | ||| | || ||||| || | ||| Sbjct 78631 CTACCAGACTTATATTTTTACCAGACAAGTTTTTCACAAAAATTTCCAT 78679 >seq6761 Length=90290 Score = 127 bits (140), Expect = 4e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 |||||||| || ||||||| |||||| ||||| || |||| | ||||||| || Sbjct 70945 TGCAGAGTGCTCTCGTTCTGTACATTATAGTCAGAAAGTGTTCTTTCATCTTCTAACTGA 70886 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || ||||| || | || |||||||| ||||| ||||||||||| |||||||| | Sbjct 70885 TTACCTGCAAAAATAATCCTCTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATTTGA 70826 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | |||||| || || || ||||| ||| | |||| || |||||| || || || || Sbjct 70825 GATTTTACGTTATCGATGGTATCTGACGGTACAACTTGCAGAGTTATTGTTTTACCAGTA 70766 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || || | |||||| ||||| Sbjct 70765 AGTGTTTTCATAAATATTTGCAT 70743 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 82629 ATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTT 82688 ||||| || ||||| || ||| || ||| ||| ||||| || ||||| || | | | Sbjct 70696 ATATTGTACTCAGAAAGTGTTCCTCCATCTGCTAACTGTTTGCCTGCAAAAATAATTGTC 70637 Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAAT 82744 || ||||| ||||| ||||||||||| |||||||| || | |||||| | |||||| Sbjct 70636 TGCTGATCAGGAGGAATTCCTTCCTTGTCTTGAATTTTAGATTTTACCTCTTCAAT 70581 >seq5140 Length=69470 Score = 113 bits (124), Expect = 9e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 82629 ATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTT 82688 ||||| |||||||| || |||| || | ||||| ||||| || |||||||||| | Sbjct 5343 ATATTGTAATCAGAAAGTGTTCTTCCATGTTCTAACTGTTTACCTACAAAGATTAGCCCC 5284 Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 |||||||| ||| ||||||| || |||||||| || ||||||||||||||| ||| Sbjct 5283 TGTTGATCCATAGGAATTCCTTTTTTGTCTTGAATTTTAAATTTTACATTTTCAATGGTA 5224 Query 82749 TCATTAGGTTCTACTTCCAAAGTTA 82773 || ||||| ||||||| ||||| Sbjct 5223 TCTGACGGTTCAACTTCCAGAGTTA 5199 Score = 107 bits (118), Expect = 4e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 82629 ATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTT 82688 ||||| ||| ||| || || | | ||||||| ||| | || |||||||| || Sbjct 7167 ATATTGTAACTAGAAAGTGTTTTGTCATCTTCTAACTGTCTACCTGCAAAGATAAGCAGC 7108 Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 |||||||| ||||| |||||||| || ||||||||||| | ||||||||||||||| ||| Sbjct 7107 TGTTGATCAGGAGGAATTCCTTCTTTGTCTTGAATCTTAGATTTTACATTTTCAATGGTA 7048 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 || |||| || |||| || ||| || || || | | || | ||| || || ||| Sbjct 7047 TCTGACAGTTCAACGTCCAGAGATATTGTTTTACCAGAAAGTGTTTCTACTAAAATTTGC 6988 Query 82809 AT 82810 || Sbjct 6987 AT 6986 Score = 104 bits (114), Expect = 5e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 82629 ATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTT 82688 || || |||| ||| || |||| || ||||||| | || || |||||||| || Sbjct 6027 ATGTTGTAATTAGAAAGTGTTCTTCCATCTTCTAACTTCTTACCTGCAAAGATAAGCTGC 5968 Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 |||||||| | ||| |||| ||| || ||||||||| | | ||||||||||||||| ||| Sbjct 5967 TGTTGATCCGTAGGAATTCTTTCTTTGTCTTGAATCATAGATTTTACATTTTCAATGGTA 5908 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 || ||||| ||||||| |||| || | || || | || || || || || ||| Sbjct 5907 TCTGACGGTTCAACTTCCAGCGTTAATGTTTCACCAGTAAGTGTTTTCACTAAAATTTGC 5848 Query 82809 AT 82810 || Sbjct 5847 AT 5846 Score = 104 bits (114), Expect = 5e-17 Identities = 147/206 (71%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 |||||||| || |||||||||||||| ||||| || || | || ||||| | | Sbjct 7419 TGCAGAGTGCTCTCCTTCTGTATATTATAGTCAGAAAGTGTTGTTCCATCTTCGAACAGC 7360 Query 82668 TTTCCAGC---AAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 | | | | ||||| || ||||||||||| ||| | ||||||||||| |||||||| Sbjct 7359 TGACGACCTTTAAAGACAAGCCTTTGTTGATCGGGAAGAATTCCTTCCTTGTCTTGAATT 7300 Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 ||| |||||| |||||||| |||| ||||| ||||| | ||| || || | || Sbjct 7299 TTTAATTTTACGTTTTCAATGGTATGTGATGGTTCAACTTCTAGAGTGATTGTTCTACCA 7240 Query 82785 GTCAACGTCTTTACAAATATCTGCAT 82810 || || || |||| || ||||| Sbjct 7239 GTAGGTGTTTTCGCAAAAATTTGCAT 7214 Score = 96.9 bits (106), Expect = 7e-15 Identities = 133/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 82629 ATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTT 82688 ||||| ||| ||| || || | | ||||||| ||| | || |||||||| || Sbjct 6939 ATATTGTAACTAGAAAGTGTTTTGTCATCTTCTAACTGTCTACCTGCAAAGATAAGCTGC 6880 Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 ||||||| ||||| |||||| | || ||||||||||| | ||||| |||||||| ||| Sbjct 6879 TGTTGATGAGGAGGAATTCCTGCTTTGTCTTGAATCTTAGATTTTAAGTTTTCAATGGTA 6820 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTT--ACAAATATCT 82806 || ||||| ||||||| || ||| || || || || | || ||| || || || | Sbjct 6819 TCTGACGGTTCAACTTCCAGAGATATTGTTTTACCAGT--AGGTGTTTCCACGAAAATTT 6762 Query 82807 GCAT 82810 |||| Sbjct 6761 GCAT 6758 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 82629 ATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTT 82688 ||||| ||| ||| || || | | ||||||| ||||| || |||||||| || Sbjct 4333 ATATTGTAACTAGAAAGTGTTTTGTCATCTTCTAACTGTTTACCTGCAAAGATAAGCTGC 4274 Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 |||||||| ||||| |||||||| || | ||||||| | | ||||||||||||||| ||| Sbjct 4273 TGTTGATCAGGAGGAATTCCTTCTTTGTTTTGAATCATAGATTTTACATTTTCAATGGTA 4214 Query 82749 TC 82750 || Sbjct 4213 TC 4212 Score = 91.5 bits (100), Expect = 3e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||||| | || || |||||||| || |||||||| ||||| ||||| | || Sbjct 5544 TCTTCTAACTTCTTACCTGCAAAGATAAGCTGCTGTTGATCCGGAGGAATTCCCTTTTTG 5485 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 ||||||||| | | ||||||||||||||| | ||| | ||||| ||||||| ||||| Sbjct 5484 TCTTGAATCATAGATTTTACATTTTCAATGGCATCTGTTGGTTCAACTTCCAGAGTTA 5427 >seq1283 Length=128015 Score = 84.2 bits (92), Expect = 4e-11 Identities = 94/125 (75%), Gaps = 3/125 (2%) Strand=Plus/Plus Query 82629 ATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTT 82688 ||||| |||| ||| || ||||||| | |||| ||||| || ||||| || || || Sbjct 30148 ATATTGTAATTAGAAAGTGTTCTACCATATTCTTACTGTTTACCTGCAAATATAAGCCTC 30207 Query 82689 TGTTGATCTGGAGGT---ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATC 82745 || ||||| | ||| |||||||| || | ||||||| | | |||||||||||| || Sbjct 30208 TGATGATCAGAAGGAGAAATTCCTTCTTTGTTTTGAATCATAGATTTTACATTTTCGATA 30267 Query 82746 GTATC 82750 ||||| Sbjct 30268 GTATC 30272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981555995088501