Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02-
27] 21,559 sequences; 873,088,235 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq2947 143 5e-29
seq863 132 9e-26
seq6761 127 4e-24
seq5140 113 9e-20
seq1283 84.2 4e-11
>seq2947
Length=87168
Score = 143 bits (158), Expect = 5e-29
Identities = 169/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| || || | || || || || |||||||| || || || || |
Sbjct 53160 TACCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGG 53219
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
||| |||| ||||| ||||||||||| ||||| ||||| || | || || ||||| |
Sbjct 53220 ATAATGTTCTTCCGTCCTCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGGG 53279
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || |||||||| || || || || | ||| ||||| || || || ||| | |||||||
Sbjct 53280 GAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTA 53339
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| || | || || |||||||| |||| || || ||||| ||||||||
Sbjct 53340 CCTCAAGGGTGATGGTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCAT 53388
Score = 132 bits (146), Expect = 9e-26
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || | || || || || |||||||| || || || || |||| |||| ||
Sbjct 52945 ACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCC 53004
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
||| || || || || ||||||||||| || | || || ||||| || || ||||||||
Sbjct 53005 GTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTT 53064
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
|| || || || | ||| ||||| || || || ||| | |||||||| || | || ||
Sbjct 53065 GTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGAT 53124
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| |||| || || ||||| ||||||||
Sbjct 53125 GGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 53160
>seq863
Length=118355
Score = 132 bits (146), Expect = 9e-26
Identities = 144/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679
|| ||||| | |||||| ||||| || |||| | ||||||| || || || ||||||
Sbjct 78261 TCCTTCTGAACATTATAGTCAGAAAGTGTTCTTTCATCTTCTAACTGATTACCTGCAAAG 78320
Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739
|| | || |||||||| ||||| ||||||||||| |||||||| || | ||||| ||
Sbjct 78321 ATAATCCTCTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATTTTAGATTTTATGTTA 78380
Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799
||||| ||||| ||||| ||||||| |||||| || || || || | | || |||
Sbjct 78381 TCAATGGTATCTGATGGTTCAACTTCCAGAGTTATTGTTTTACCGGTAAGTTTTTTCACA 78440
Query 82800 AATATCTGCAT 82810
|| || |||||
Sbjct 78441 AAAATTTGCAT 78451
Score = 93.3 bits (102), Expect = 8e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||||||||| | || | |||| || | ||| | | ||| |||||||| ||||
Sbjct 78451 TACCTCCTCTAAGCCGTAACACTATATGAATAGTGCTCTTCTGCTGAATATTATAGTCAG 78510
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || |||| || | ||||| ||||| || ||||| || | || ||||||| ||||
Sbjct 78511 AAAGTGTTCTTCCATTTTCTAACTGTTTGCCGGCAAAAATAAACCTCTGTTGATTAGGAG 78570
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| ||||||||||| ||||||| || |||||| |||||| ||| || || |
Sbjct 78571 GAATTCCTTCCTTGTCTTGAACTTTATATTTTACCACTTCAATTCGATCTAACGGATCAA 78630
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| ||| | |||| | || || | ||| | || ||||| || | |||
Sbjct 78631 CTACCAGACTTATATTTTTACCAGACAAGTTTTTCACAAAAATTTCCAT 78679
>seq6761
Length=90290
Score = 127 bits (140), Expect = 4e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|||||||| || ||||||| |||||| ||||| || |||| | ||||||| ||
Sbjct 70945 TGCAGAGTGCTCTCGTTCTGTACATTATAGTCAGAAAGTGTTCTTTCATCTTCTAACTGA 70886
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| || ||||| || | || |||||||| ||||| ||||||||||| |||||||| |
Sbjct 70885 TTACCTGCAAAAATAATCCTCTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATTTGA 70826
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
| |||||| || || || ||||| ||| | |||| || |||||| || || || ||
Sbjct 70825 GATTTTACGTTATCGATGGTATCTGACGGTACAACTTGCAGAGTTATTGTTTTACCAGTA 70766
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
| || || | |||||| |||||
Sbjct 70765 AGTGTTTTCATAAATATTTGCAT 70743
Score = 87.8 bits (96), Expect = 4e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 82629 ATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTT 82688
||||| || ||||| || ||| || ||| ||| ||||| || ||||| || | | |
Sbjct 70696 ATATTGTACTCAGAAAGTGTTCCTCCATCTGCTAACTGTTTGCCTGCAAAAATAATTGTC 70637
Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAAT 82744
|| ||||| ||||| ||||||||||| |||||||| || | |||||| | ||||||
Sbjct 70636 TGCTGATCAGGAGGAATTCCTTCCTTGTCTTGAATTTTAGATTTTACCTCTTCAAT 70581
>seq5140
Length=69470
Score = 113 bits (124), Expect = 9e-20
Identities = 112/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 82629 ATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTT 82688
||||| |||||||| || |||| || | ||||| ||||| || |||||||||| |
Sbjct 5343 ATATTGTAATCAGAAAGTGTTCTTCCATGTTCTAACTGTTTACCTACAAAGATTAGCCCC 5284
Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748
|||||||| ||| ||||||| || |||||||| || ||||||||||||||| |||
Sbjct 5283 TGTTGATCCATAGGAATTCCTTTTTTGTCTTGAATTTTAAATTTTACATTTTCAATGGTA 5224
Query 82749 TCATTAGGTTCTACTTCCAAAGTTA 82773
|| ||||| ||||||| |||||
Sbjct 5223 TCTGACGGTTCAACTTCCAGAGTTA 5199
Score = 107 bits (118), Expect = 4e-18
Identities = 133/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 82629 ATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTT 82688
||||| ||| ||| || || | | ||||||| ||| | || |||||||| ||
Sbjct 7167 ATATTGTAACTAGAAAGTGTTTTGTCATCTTCTAACTGTCTACCTGCAAAGATAAGCAGC 7108
Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748
|||||||| ||||| |||||||| || ||||||||||| | ||||||||||||||| |||
Sbjct 7107 TGTTGATCAGGAGGAATTCCTTCTTTGTCTTGAATCTTAGATTTTACATTTTCAATGGTA 7048
Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808
|| |||| || |||| || ||| || || || | | || | ||| || || |||
Sbjct 7047 TCTGACAGTTCAACGTCCAGAGATATTGTTTTACCAGAAAGTGTTTCTACTAAAATTTGC 6988
Query 82809 AT 82810
||
Sbjct 6987 AT 6986
Score = 104 bits (114), Expect = 5e-17
Identities = 132/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 82629 ATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTT 82688
|| || |||| ||| || |||| || ||||||| | || || |||||||| ||
Sbjct 6027 ATGTTGTAATTAGAAAGTGTTCTTCCATCTTCTAACTTCTTACCTGCAAAGATAAGCTGC 5968
Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748
|||||||| | ||| |||| ||| || ||||||||| | | ||||||||||||||| |||
Sbjct 5967 TGTTGATCCGTAGGAATTCTTTCTTTGTCTTGAATCATAGATTTTACATTTTCAATGGTA 5908
Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808
|| ||||| ||||||| |||| || | || || | || || || || || |||
Sbjct 5907 TCTGACGGTTCAACTTCCAGCGTTAATGTTTCACCAGTAAGTGTTTTCACTAAAATTTGC 5848
Query 82809 AT 82810
||
Sbjct 5847 AT 5846
Score = 104 bits (114), Expect = 5e-17
Identities = 147/206 (71%), Gaps = 3/206 (1%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|||||||| || |||||||||||||| ||||| || || | || ||||| | |
Sbjct 7419 TGCAGAGTGCTCTCCTTCTGTATATTATAGTCAGAAAGTGTTGTTCCATCTTCGAACAGC 7360
Query 82668 TTTCCAGC---AAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724
| | | | ||||| || ||||||||||| ||| | ||||||||||| ||||||||
Sbjct 7359 TGACGACCTTTAAAGACAAGCCTTTGTTGATCGGGAAGAATTCCTTCCTTGTCTTGAATT 7300
Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784
||| |||||| |||||||| |||| ||||| ||||| | ||| || || | ||
Sbjct 7299 TTTAATTTTACGTTTTCAATGGTATGTGATGGTTCAACTTCTAGAGTGATTGTTCTACCA 7240
Query 82785 GTCAACGTCTTTACAAATATCTGCAT 82810
|| || || |||| || |||||
Sbjct 7239 GTAGGTGTTTTCGCAAAAATTTGCAT 7214
Score = 96.9 bits (106), Expect = 7e-15
Identities = 133/184 (72%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 82629 ATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTT 82688
||||| ||| ||| || || | | ||||||| ||| | || |||||||| ||
Sbjct 6939 ATATTGTAACTAGAAAGTGTTTTGTCATCTTCTAACTGTCTACCTGCAAAGATAAGCTGC 6880
Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748
||||||| ||||| |||||| | || ||||||||||| | ||||| |||||||| |||
Sbjct 6879 TGTTGATGAGGAGGAATTCCTGCTTTGTCTTGAATCTTAGATTTTAAGTTTTCAATGGTA 6820
Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTT--ACAAATATCT 82806
|| ||||| ||||||| || ||| || || || || | || ||| || || || |
Sbjct 6819 TCTGACGGTTCAACTTCCAGAGATATTGTTTTACCAGT--AGGTGTTTCCACGAAAATTT 6762
Query 82807 GCAT 82810
||||
Sbjct 6761 GCAT 6758
Score = 95.1 bits (104), Expect = 2e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 82629 ATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTT 82688
||||| ||| ||| || || | | ||||||| ||||| || |||||||| ||
Sbjct 4333 ATATTGTAACTAGAAAGTGTTTTGTCATCTTCTAACTGTTTACCTGCAAAGATAAGCTGC 4274
Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748
|||||||| ||||| |||||||| || | ||||||| | | ||||||||||||||| |||
Sbjct 4273 TGTTGATCAGGAGGAATTCCTTCTTTGTTTTGAATCATAGATTTTACATTTTCAATGGTA 4214
Query 82749 TC 82750
||
Sbjct 4213 TC 4212
Score = 91.5 bits (100), Expect = 3e-13
Identities = 91/118 (77%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
||||||| | || || |||||||| || |||||||| ||||| ||||| | ||
Sbjct 5544 TCTTCTAACTTCTTACCTGCAAAGATAAGCTGCTGTTGATCCGGAGGAATTCCCTTTTTG 5485
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773
||||||||| | | ||||||||||||||| | ||| | ||||| ||||||| |||||
Sbjct 5484 TCTTGAATCATAGATTTTACATTTTCAATGGCATCTGTTGGTTCAACTTCCAGAGTTA 5427
>seq1283
Length=128015
Score = 84.2 bits (92), Expect = 4e-11
Identities = 94/125 (75%), Gaps = 3/125 (2%)
Strand=Plus/Plus
Query 82629 ATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTT 82688
||||| |||| ||| || ||||||| | |||| ||||| || ||||| || || ||
Sbjct 30148 ATATTGTAATTAGAAAGTGTTCTACCATATTCTTACTGTTTACCTGCAAATATAAGCCTC 30207
Query 82689 TGTTGATCTGGAGGT---ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATC 82745
|| ||||| | ||| |||||||| || | ||||||| | | |||||||||||| ||
Sbjct 30208 TGATGATCAGAAGGAGAAATTCCTTCTTTGTTTTGAATCATAGATTTTACATTTTCGATA 30267
Query 82746 GTATC 82750
|||||
Sbjct 30268 GTATC 30272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981555995088501
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |