Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq4098 87.8 2e-12 >seq4098 Length=55407 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||| ||||| ||| ||||| | ||| |||||||||||||||| Sbjct 37106 TTCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATT 37165 Query 8717 CCCCGACGAGGAG 8729 ||||| || |||| Sbjct 37166 CCCCGCCGGGGAG 37178 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||| ||||| ||| ||||| | ||| |||||||||||||||| Sbjct 37251 TTCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATT 37310 Query 8717 CCCCGACGAGGAG 8729 ||||| || |||| Sbjct 37311 CCCCGCCGGGGAG 37323 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||| || |||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||| Sbjct 29098 TCCCCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 29157 Query 8718 CCCGACGAGGAG 8729 |||| ||||||| Sbjct 29158 CCCGCCGAGGAG 29169 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||| Sbjct 37107 TCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 37166 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 37167 CCCGCCGGGGAGG 37179 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||| Sbjct 37252 TCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 37311 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 37312 CCCGCCGGGGAGG 37324 Score = 82.4 bits (90), Expect = 1e-10 Identities = 64/74 (86%), Gaps = 3/74 (4%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||||||| |||||||||||| ||||| ||| ||||| |||| |||||||||||||||| Sbjct 28662 GTCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTC--ACGGAAGACCGGGGTTCGATT 28719 Query 11788 CCCCGACGAGGAGG 11801 ||||| || ||||| Sbjct 28720 CCCCGCCGGGGAGG 28733 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/72 (86%), Gaps = 2/72 (3%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| ||| ||||| |||| ||||||||||||||||| Sbjct 28663 TCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTC--ACGGAAGACCGGGGTTCGATTC 28720 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 28721 CCCGCCGGGGAG 28732 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||| || |||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||| Sbjct 29098 TCCCCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 29157 Query 11789 CCCGACGAGGAG 11800 |||| ||||||| Sbjct 29158 CCCGCCGAGGAG 29169 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||| ||||||| ||||| ||| ||||| | ||| |||||||||||||||| Sbjct 37436 TTCCTCGGTAGTTTAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATT 37495 Query 8717 CCCCGACGAGGAG 8729 ||||| || |||| Sbjct 37496 CCCCGCCGGGGAG 37508 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| ||||||||||| ||||| ||| ||||| | ||| |||||||||||||||| Sbjct 37625 TTCCTCGGAAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATT 37684 Query 8717 CCCCGACGAGGAG 8729 ||||| || |||| Sbjct 37685 CCCCGCCGGGGAG 37697 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||| ||||| ||| ||||| | ||| ||| |||||||||||| Sbjct 39085 TTCCTCGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGAACGGGGTTCGATT 39144 Query 8717 CCCCGACGAGGAG 8729 ||||| || |||| Sbjct 39145 CCCCGCCGGGGAG 39157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652668866486960