Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2947 125 7e-24 seq1416 82.4 7e-11 >seq2947 Length=87168 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| ||| | ||| ||||||||||||||| || Sbjct 52964 GTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCGAGCTGCTTACCA 53023 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | ||||| ||||||||||| || || || ||||||||||| ||| || ||| Sbjct 53024 GCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTG 53083 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| | || || || || | ||||| ||| ||||| ||||||||| Sbjct 53084 ACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTT 53143 Query 133644 TTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 53144 TTGACAAAGATCTGCAT 53160 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| ||| | || |||||| || || || || Sbjct 53192 GTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCTAGTTGTTTACCA 53251 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | ||||| ||||||||||| || || || ||||||||||| ||| || ||| Sbjct 53252 GCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATTTTGGATTTG 53311 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| | || || || || | ||||| ||| ||||| ||||| ||| Sbjct 53312 ACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGTGTT 53371 Query 133644 TTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 53372 TTGACAAAGATCTGCATG 53389 >seq1416 Length=111358 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 || ||||||| ||||| | || || |||||||||||||| || | |||||| || | Sbjct 37470 TGAACTCTACAATCTCTGTACAGAGGTTGCTGCATTTGATTGTACCAAGGTTCTTCTGGT 37411 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 | ||||| ||||| || || |||||||| |||||||| || Sbjct 37410 TACTCTTCCTGTTACAAGCATCCTTGTAGAGCATGTATGG 37371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483290524137160