Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2947 123 2e-23 >seq2947 Length=87168 Score = 123 bits (136), Expect = 2e-23 Identities = 170/234 (73%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | || | ||| || ||| |||||| || |||||||| ||||| Sbjct 53161 ACCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGA 53220 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| | | |||| || | |||||| || || || || | ||||||||| ||| | || Sbjct 53221 TAATGTTCTTCCGTCCTCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGGGG 53280 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| ||||| ||| | ||| || | |||||| |||| ||| | Sbjct 53281 AATACCTTCCTTGTCCTGGATTTTGGATTTGA-CATTCTCGATGGTGTCACTTGGTTCTA 53339 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 | |||| ||||| || || || || | ||||| |||||||||||||| |||| Sbjct 53340 CCTCAAGGGTGATGGTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCAT-GTTG 53392 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || | ||| || ||| |||||| || |||||||| ||||| Sbjct 52934 CCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGAT 52993 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || | | |||| || | || || || ||||| || | ||||||||| ||| | || Sbjct 52994 AACGTTCTTCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGA 53053 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| ||||| ||| | ||| || | |||||| |||| ||| || Sbjct 53054 ATACCTTCCTTGTCCTGGATTTTGGATTTGA-CATTCTCGATGGTGTCACTTGGTTCTAC 53112 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| || || || || | ||||| ||||||||||||||| Sbjct 53113 CTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCATA 53161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328617632921280