Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq9509 95.1 2e-13 seq5542 95.1 2e-13 >seq9509 Length=48202 Score = 95.1 bits (104), Expect = 2e-13 Identities = 137/188 (73%), Gaps = 13/188 (7%) Strand=Plus/Plus Query 1456095 CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAA 1456154 ||||||||| || | || | || | ||| ||||| ||||||||| ||||||||||| | Sbjct 29078 CGCCATCGAAACCATACCAGCTGTAAAGAAGAAGGCTGACTGGGCGCTGAAGTGGATCGA 29137 Query 1456155 CAAGGAGG--GCCTCG-ACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGC 1456210 | | | | ||| | ||| ||| || | || | ||||||||| ||||||||| Sbjct 29138 CCACAAAGTAGCCAGGTACAG-----CGAACGTGTGGTAGCCTTTGCCGCTGTCGAGGGC 29192 Query 1456211 ATCTTTTTCTCGGG--CAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGC 1456268 ||||||||||| || || || || || ||||| ||||||||||| || || | |||| Sbjct 29193 ATCTTTTTCTCAGGATCATTTGCT--GCAATCTTCTGGCTCAAGAAACGTGGATTAATGC 29250 Query 1456269 CCGGTCTT 1456276 | || ||| Sbjct 29251 CAGGCCTT 29258 >seq5542 Length=71200 Score = 95.1 bits (104), Expect = 2e-13 Identities = 137/188 (73%), Gaps = 13/188 (7%) Strand=Plus/Plus Query 1456095 CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAA 1456154 ||||||||| || | || | || | ||| ||||| ||||||||| ||||||||||| | Sbjct 64385 CGCCATCGAAACCATACCAGCTGTAAAGAAGAAGGCTGACTGGGCGCTGAAGTGGATCGA 64444 Query 1456155 CAAGGAGG--GCCTCG-ACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGC 1456210 | | | | ||| | ||| ||| || | || | ||||||||| ||||||||| Sbjct 64445 CCACAAAGTAGCCAGGTACAG-----CGAACGTGTGGTAGCCTTTGCCGCTGTCGAGGGC 64499 Query 1456211 ATCTTTTTCTCGGG--CAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGC 1456268 ||||||||||| || || || || || ||||| ||||||||||| || || | |||| Sbjct 64500 ATCTTTTTCTCAGGATCATTTGCT--GCAATCTTCTGGCTCAAGAAACGTGGATTAATGC 64557 Query 1456269 CCGGTCTT 1456276 | || ||| Sbjct 64558 CAGGCCTT 64565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175731794824558