Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2947 95.1 1e-14 seq2063 89.7 5e-13 seq6761 84.2 2e-11 seq863 82.4 8e-11 >seq2947 Length=87168 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GC 134544 ||| || | ||| || | || || || || ||||| || || || ||||||||||| | Sbjct 52933 TCCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGA 52992 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 |||| | | ||| |||||||| || || ||||| || | ||||||||| || || | Sbjct 52993 TAACGTTCT-TCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTG 53051 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || || || ||||| |||||| || | ||||| | ||| | Sbjct 53052 GAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTA 53111 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || ||||| || || || | |||||| || || || ||||| Sbjct 53112 CCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 53160 >seq2063 Length=101605 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || |||| |||| |||||| || | ||||||||||| ||||||| ||| || Sbjct 41949 TTCCACCCTTGAGGCGCATCACGAGATGGATAGTGGATTCCTTGTGAATGTAGTAATCTG 41890 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||||| | ||||| || ||| || ||| | || | || |||| || || | Sbjct 41889 CCACGGTTTTCTTTTCGTCTAGTTGTACCCCAGCATATATGAGGCGTTGCTTTTCTGGTG 41830 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 |||| || || ||||| || || | ||||| || ||| | || | ||||| Sbjct 41829 GTATACCAATCTTGTCTTGTATCTTCTTCTTGACTGCAGAGAATTTATCCTCTGCTTCCA 41770 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | |||| ||||||||| | | || |||||||| || || || ||||| Sbjct 41769 CCTCGATGGTAATGGTTCTCTCCGTCAAAGTTTTCACAAAGATCTGCAT 41721 >seq6761 Length=90290 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 134567 CTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAAT 134626 |||||||||||||||||| | ||||||||| || || || ||||| || |||||||| Sbjct 70661 CTGTTTGCCTGCAAAAATAATTGTCTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 70602 Query 134627 TTTTTGTTTGACCGCGTCCAATGTG-TCGGACGATTCCACGTCGAGAGTAATGGTTTTAC 134685 ||| ||| ||| | | |||| || || ||| | || || || ||||| || |||||| Sbjct 70601 TTTAGATTTTACCTC-TTCAATTTGATCCGACAAATCAACTTCCAGAGTTATTTTTTTAC 70543 Query 134686 CGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | | |||| || ||||||| ||| Sbjct 70542 CAAAAACTGTTTGCACAAAAATTTCCAT 70515 >seq863 Length=118355 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || | ||| || |||||||| || | | ||| ||||| || || || ||||| || Sbjct 78297 TCTTCTAACTGATTACCTGCAAAGATAATCCTCTGTTGATCAGGAGGAATTCCTTCCTTG 78356 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 ||||||||||| ||| | || | || || || | ||| || || ||||| || Sbjct 78357 TCTTGAATTTTAGATTTTATGTTATCAATGGTATCTGATGGTTCAACTTCCAGAGTTATT 78416 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||||||||| | |||| || ||||||||||| Sbjct 78417 GTTTTACCGGTAAGTTTTTTCACAAAAATTTGCAT 78451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505262201448680