Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq9509 143 4e-29 seq5542 143 4e-29 seq12447 95.1 2e-14 seq3766 95.1 2e-14 >seq9509 Length=48202 Score = 143 bits (158), Expect = 4e-29 Identities = 164/220 (75%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| || ||||| | ||||||||| ||||| || || ||||||| ||||| || | Sbjct 29292 CCTCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 29233 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| || || |||||||| ||||| || || |||||||| || || || ||||| | Sbjct 29232 TGAGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGG 29173 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTTCTGTGCCCAATCAG 39815 | || | | || | ||| || | | || || ||||||||| | ||||| |||| Sbjct 29172 CTACCACACGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCAG 29113 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 | |||||||||||| || || ||||| || || || || Sbjct 29112 CCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCGTTGAA 29073 Score = 125 bits (138), Expect = 1e-23 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 ||| |||||| ||||| || || ||||| || || || || || | |||||||||| || Sbjct 27930 CCAGATTTTCGTTCACGATGCCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAA 27871 Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 40118 | | | ||| | ||| ||| | |||||| || ||||||||||| | ||| || | Sbjct 27870 AGTGCTGTTCTTGCGGTTTCAGCCCCTCCCAGTCCTTCATATCTTTTGAGAGATCGACCT 27811 Query 40119 CTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATT 40178 | || |||||||| || || || |||||||| |||||||| ||||||| || |||| | Sbjct 27810 CCTCGGCTGTCCAGAAAGAAGCTTCTGCCTTCTTGTACATTCTCCATATGTCCTGATACT 27751 Query 40179 GTATTGGAAAAATAACAAATCT 40200 || || |||| |||||| || Sbjct 27750 CGATAGGGAAAAGAACAAACCT 27729 Score = 91.5 bits (100), Expect = 2e-13 Identities = 87/109 (80%), Gaps = 3/109 (3%) Strand=Plus/Minus Query 39301 ATCTTCTT-GT--GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAA 39357 |||||||| || ||||| | || |||||| |||||||| || | ||||| || || Sbjct 30432 ATCTTCTTTGTTCGACATGATGCCTGCTTTTTGATATTCACCTACTCTCTTCTCAAAGAA 30373 Query 39358 ATTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTA 39406 |||||||||||| |||| ||| || || |||||||||||||| |||||| Sbjct 30372 ATTAGTTTTGCCCTCCAGTGAAATGTTCTCCATGAAATCAAAAGGATTA 30324 >seq5542 Length=71200 Score = 143 bits (158), Expect = 4e-29 Identities = 164/220 (75%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| || ||||| | ||||||||| ||||| || || ||||||| ||||| || | Sbjct 64599 CCTCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 64540 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| || || |||||||| ||||| || || |||||||| || || || ||||| | Sbjct 64539 TGAGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGG 64480 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTTCTGTGCCCAATCAG 39815 | || | | || | ||| || | | || || ||||||||| | ||||| |||| Sbjct 64479 CTACCACACGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCAG 64420 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 | |||||||||||| || || ||||| || || || || Sbjct 64419 CCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCGTTGAA 64380 Score = 125 bits (138), Expect = 1e-23 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 ||| |||||| ||||| || || ||||| || || || || || | |||||||||| || Sbjct 63275 CCAGATTTTCGTTCACGATGCCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAA 63216 Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 40118 | | | ||| | ||| ||| | |||||| || ||||||||||| | ||| || | Sbjct 63215 AGTGCTGTTCTTGCGGTTTCAGCCCCTCCCAGTCCTTCATATCTTTTGAGAGATCGACCT 63156 Query 40119 CTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATT 40178 | || |||||||| || || || |||||||| |||||||| ||||||| || |||| | Sbjct 63155 CCTCGGCTGTCCAGAAAGAAGCTTCTGCCTTCTTGTACATTCTCCATATGTCCTGATACT 63096 Query 40179 GTATTGGAAAAATAACAAATCT 40200 || || |||| |||||| || Sbjct 63095 CGATAGGGAAAAGAACAAACCT 63074 Score = 91.5 bits (100), Expect = 2e-13 Identities = 87/109 (80%), Gaps = 3/109 (3%) Strand=Plus/Minus Query 39301 ATCTTCTT-GT--GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAA 39357 |||||||| || ||||| | || |||||| |||||||| || | ||||| || || Sbjct 65741 ATCTTCTTTGTTCGACATGATGCCTGCTTTTTGATATTCACCTACTCTCTTCTCAAAGAA 65682 Query 39358 ATTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTA 39406 |||||||||||| |||| ||| || || |||||||||||||| |||||| Sbjct 65681 ATTAGTTTTGCCCTCCAGTGAAATGTTCTCCATGAAATCAAAAGGATTA 65633 >seq12447 Length=33603 Score = 95.1 bits (104), Expect = 2e-14 Identities = 110/148 (74%), Gaps = 3/148 (2%) Strand=Plus/Minus Query 39692 CGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCT 39751 || ||||| | |||||||||||| ||||| || ||||| ||||| ||||| || |||| | Sbjct 26741 CGTTTTTTCAACCAAAATATGGCTGCAAACGACCCAGAGAAGAAAATGCCCTCCACTGAT 26682 Query 39752 GCAAATGCAACAAGTCTCTCTCCGTAACTTGTATC---ATTATGTATCCACTTCTGTGCC 39808 |||||||| || || ||||| || | || || | | ||||||||| |||| Sbjct 26681 GCAAATGCTACTAGCCTCTCAGCGAATGATGCCTCGGAACTTGAAATCCACTTCAATGCC 26622 Query 39809 CAATCAGCTTTCTTCTTTACACAAGGCA 39836 || || ||||| || || ||||| |||| Sbjct 26621 CAGTCTGCTTTTTTTTTGACACAGGGCA 26594 >seq3766 Length=89028 Score = 95.1 bits (104), Expect = 2e-14 Identities = 110/148 (74%), Gaps = 3/148 (2%) Strand=Plus/Plus Query 39692 CGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCT 39751 || ||||| | |||||||||||| ||||| || ||||| ||||| ||||| || |||| | Sbjct 52040 CGTTTTTTCAACCAAAATATGGCTGCAAACGACCCAGAGAAGAAAATGCCCTCCACTGAT 52099 Query 39752 GCAAATGCAACAAGTCTCTCTCCGTAACTTGTATC---ATTATGTATCCACTTCTGTGCC 39808 |||||||| || || ||||| || | || || | | ||||||||| |||| Sbjct 52100 GCAAATGCTACTAGCCTCTCAGCGAATGATGCCTCGGAACTTGAAATCCACTTCAATGCC 52159 Query 39809 CAATCAGCTTTCTTCTTTACACAAGGCA 39836 || || ||||| || || ||||| |||| Sbjct 52160 CAGTCTGCTTTTTTTTTGACACAGGGCA 52187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686723686664760