Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq12447 87.8 1e-12 seq3766 87.8 1e-12 >seq12447 Length=33603 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 44072 AAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAAATGATTCTTTTGGAGAA 44128 ||| | |||||||||||||| | || ||||| || ||| | | || || | || Sbjct 26605 AAAAAAAAAGCAGACTGGGCATTGAAGTGGATTTCAAGTTCCGAGGCATCATTCGCTGAG 26664 Query 44129 CGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATA 44188 | || || || |||||| ||||| ||||||||||| || || |||||||| |||||| Sbjct 26665 AGGCTAGTAGCATTTGCATCAGTGGAGGGCATTTTCTTCTCTGGGTCGTTTGCAGCCATA 26724 Query 44189 TTTTGGTTAAAGAAACG 44205 |||||||| || ||||| Sbjct 26725 TTTTGGTTGAAAAAACG 26741 >seq3766 Length=89028 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 44072 AAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAAATGATTCTTTTGGAGAA 44128 ||| | |||||||||||||| | || ||||| || ||| | | || || | || Sbjct 52176 AAAAAAAAAGCAGACTGGGCATTGAAGTGGATTTCAAGTTCCGAGGCATCATTCGCTGAG 52117 Query 44129 CGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATA 44188 | || || || |||||| ||||| ||||||||||| || || |||||||| |||||| Sbjct 52116 AGGCTAGTAGCATTTGCATCAGTGGAGGGCATTTTCTTCTCTGGGTCGTTTGCAGCCATA 52057 Query 44189 TTTTGGTTAAAGAAACG 44205 |||||||| || ||||| Sbjct 52056 TTTTGGTTGAAAAAACG 52040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397351568311795