Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2947 95.1 1e-14 >seq2947 Length=87168 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGC-TCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || ||||| || || ||||||||| | | ||| | |||| |||||||| ||||| Sbjct 52964 GTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTC-CGTCCTCGAGCTGCTTACC 53022 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || | ||||||||||| || || || || | ||| || || || ||| ||| ||| Sbjct 53023 AGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTT 53082 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | | ||| || || || || || | ||||| |||||||| Sbjct 53083 GACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGT 53142 Query 27230 TTTCACAAAGATTTGCATA 27248 ||| |||||||| |||||| Sbjct 53143 TTTGACAAAGATCTGCATA 53161 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGC-TCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || ||||| || || ||||||||| | ||||| | |||| || || |||||||| Sbjct 53192 GTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTC-CGTCCTCTAGTTGTTTACC 53250 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | ||||||||||| || || || || | ||| || || || ||| ||| ||| Sbjct 53251 AGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATTTTGGATTT 53310 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | | ||| || || || || || | ||||| ||||| || Sbjct 53311 GACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGTGT 53370 Query 27230 TTTCACAAAGATTTGCAT 27247 ||| |||||||| ||||| Sbjct 53371 TTTGACAAAGATCTGCAT 53388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424822748353608