Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2947 181 1e-40 seq863 127 2e-24 seq2470 120 3e-22 seq6761 116 4e-21 seq408 89.7 6e-13 seq5140 84.2 2e-11 >seq2947 Length=87168 Score = 181 bits (200), Expect = 1e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||| || || || |||||||| || || |||||||| || || || Sbjct 53160 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 53101 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || | ||||| ||||||||||| || ||||| ||||||||| Sbjct 53100 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 53041 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||||||||| |||||||| | | || || | ||||| || Sbjct 53040 CAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGACGGAAGAACGTTATCCGACTACAAC 52981 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| || || ||||| || ||||| ||| | ||||| || |||||| Sbjct 52980 ATCCAGAAAGAGTCCACACTCCATCTTGTCCTTCGTCTCCGTGGTGGA 52933 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||| || || || |||||||| || || |||||||| || || || Sbjct 53388 ATGCAGATCTTTGTCAAAACACTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 53329 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || | ||||| ||||||||||| || ||||| ||||||||| Sbjct 53328 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCCCCAGACCAG 53269 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || |||||||| ||||| ||||| | | || || | ||||| || Sbjct 53268 CAGCGTCTCATCTTCGCTGGTAAACAACTAGAGGACGGAAGAACATTATCCGACTACAAC 53209 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || ||||| ||| | ||||| || ||||| Sbjct 53208 ATCCAGAAAGAGTCCACACTCCATCTTGTCCTTCGTCTCCGTGGTGG 53162 >seq863 Length=118355 Score = 127 bits (140), Expect = 2e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || | |||||||| || || || ||||| || ||||| || Sbjct 78451 ATGCAAATTTTTGTGAAAAAACTTACCGGTAAAACAATAACTCTGGAAGTTGAACCATCA 78392 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || | || |||||||||| |||||||| ||||||||||| || || Sbjct 78391 GATACCATTGATAACATAAAATCTAAAATTCAAGACAAGGAAGGAATTCCTCCTGATCAA 78332 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| ||||| || | || ||||| | || || | ||||||||| Sbjct 78331 CAGAGGATTATCTTTGCAGGTAATCAGTTAGAAGATGAAAGAACACTTTCTGACTATAAT 78272 Query 27586 GTCCAAAAGGAATCCACTCT 27605 || || ||||| |||||| Sbjct 78271 GTTCAGAAGGAGAGCACTCT 78252 >seq2470 Length=135016 Score = 120 bits (132), Expect = 3e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 ||||| ||||||||||| || ||||| ||||||||||||||||| || || ||||||||| Sbjct 94362 AAAATCCAGGACAAGGAAGGTATTCCACCAGACCAGCAGCGTCTCATCTTCGCTGGTAAG 94303 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||| || || | | || || | ||||| || |||| || || ||||| || ||| Sbjct 94302 CAACTTGAAGACGGAAGAACGTTATCCGACTACAACATCCAGAAAGAGTCCACACTCCAT 94243 Query 27610 CTAGTCTTGCGTCTTCGCGGTGGA 27633 || ||| | ||||| || |||||| Sbjct 94242 CTTGTCCTTCGTCTCCGTGGTGGA 94219 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||| || || || |||||||| || || |||||||| || || || Sbjct 94996 ATGCAGATCTTTGTCAAAACACTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 94937 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 || | ||| | ||| | || | ||||| ||||||||||| || ||||| ||||| Sbjct 94936 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGA 94881 >seq6761 Length=90290 Score = 116 bits (128), Expect = 4e-21 Identities = 161/224 (72%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA---GTCA 27462 |||||||| ||| | || || ||||| || || || || ||||| | |||| |||| Sbjct 70743 ATGCAAATATTTATGAAAACACTTACTGGTAAAACAATAACTCTGCAAGTTGTACCGTCA 70802 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | ||| ||| | || | || || ||||||| |||||||| ||||||||||| || Sbjct 70803 G---ATACCATCGATAACGTAAAATCTCAAATTCAAGACAAGGAAGGAATTCCTCCTGAT 70859 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || ||| | | |||||||| ||||| || | || ||||| | || || | |||||| Sbjct 70860 CAACAGAGGATTATTTTTGCAGGTAATCAGTTAGAAGATGAAAGAACACTTTCTGACTAT 70919 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCG 27626 ||||| || || || |||||| ||||| ||||| || || || Sbjct 70920 AATGTACAGAACGAGAGCACTCTGCATCTTGTCTTACGACTACG 70963 >seq408 Length=162344 Score = 89.7 bits (98), Expect = 6e-13 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 32108 AGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACC 32167 |||| || ||| ||| |||||| |||| | || ||||| ||||| || |||||| Sbjct 105465 AGGCATCTCTCATGGGAACCATTATCAATTTGGCCCAGAATTTTGTTGGCAGTAATAACG 105524 Query 32168 TGAACTTACTCGAGCC-ATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCT 32226 ||||| | ||| | || ||| || |||||||| ||| | ||| ||| || ||||||||| Sbjct 105525 TGAACCTCCTCCAACCCATC-GGTCAGTTTGGTACCAGACTCCACGGGGGAAAGGATGCT 105583 Query 32227 GCGAGCTCCCGTTACATCTTCAC 32249 || || | ||||| |||||||| Sbjct 105584 GCCAGTCCTCGTTATATCTTCAC 105606 >seq5140 Length=69470 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/161 (72%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA---GTCA 27462 |||||||| || || | || ||| | || || || || |||| || ||||| |||| Sbjct 6986 ATGCAAATTTTAGTAGAAACACTTTCTGGTAAAACAATATCTCTGGACGTTGAACTGTCA 7045 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | ||| ||||| |||| | || |||| ||||| ||||| || ||||||||||| || Sbjct 7046 G---ATACCATTGAAAATGTAAAATCTAAGATTCAAGACAAAGAAGGAATTCCTCCTGAT 7102 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGA 27563 || |||| || || ||||| |||| || | || ||||| Sbjct 7103 CAACAGCTGCTTATCTTTGCAGGTAGACAGTTAGAAGATGA 7143 Score = 82.4 bits (90), Expect = 9e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || || | ||| || | || | ||||| || ||||| || Sbjct 5390 ATGCAAATTTTAGTGAAAACACCTACTGGTGAAACATTAACTCTGGAAGTTGAACCAACA 5449 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| ||||| |||| | || ||| ||||| ||||| ||||||||||||| || || Sbjct 5450 GATGCCATTGAAAATGTAAAATCTATGATTCAAGACAAAAAGGGAATTCCTCCGGATCAA 5509 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGA 27563 |||| || || ||||| |||||| | | || ||||| Sbjct 5510 CAGCAGCTTATCTTTGCAGGTAAGAAGTTAGAAGATGA 5547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570156708476080