Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq863 125 4e-24 seq5140 113 3e-20 seq6761 104 1e-17 seq2947 96.9 2e-15 seq12334 86.0 4e-12 seq995 86.0 4e-12 >seq863 Length=118355 Score = 125 bits (138), Expect = 4e-24 Identities = 150/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 34507 AGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTA 34566 |||||||||||||| |||| ||||| || |||||||||| || ||||| | || ||| Sbjct 78252 AGAGTGCTCTCCTTCTGAACATTATAGTCAGAAAGTGTTCTTTCATCTTCTAACTGATTA 78311 Query 34567 CCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGT 34626 || ||||| || | | |||||| || || || | ||| ||||||||| ||| ||| | Sbjct 78312 CCTGCAAAGATAATCCTCTGTTGATCAGGAGGAATTCCTTCCTTGTCT-TGAATTTTAGA 78370 Query 34627 TTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAA 34685 ||| | | || ||| || ||| || ||||||| ||||| ||||||||||| | Sbjct 78371 TTTTATGTTATCAATGGTATCTGATGGTTCAACTTCCAGAGTTATTGTTTTACCGGTAAG 78430 Query 34686 CGTTTTCACAAAAATCTGCAT 34706 ||||||||||||| ||||| Sbjct 78431 TTTTTTCACAAAAATTTGCAT 78451 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| || ||||| | ||| | |||||||| || ||||| ||||| || ||| Sbjct 78453 CCTCCTCTAAGCCGTAACACTATATGAATAGTGCTCTTCTGCTGAATATTATAGTCAGAA 78512 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | | ||| | ||||| |||||||| || || | |||||| | || || Sbjct 78513 AGTGTTCTTCCATTTTCTAACTGTTTGCCGGCAAAAATAAACCTCTGTTGATTAGGAGGA 78572 Query 34600 ACTCCCTCCTTGTCTGTGATCTTT-TGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| ||| |||| | ||||| | | |||| ||| || || Sbjct 78573 ATTCCTTCCTTGTCT-TGAACTTTATATTTTACCACTTCAATTCGATCTAACGGATCAAC 78631 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | ||| |||| ||||||| | || ||||||||||||| | ||| Sbjct 78632 TACCAGACTTATATTTTTACCAGACAAGTTTTTCACAAAAATTTCCAT 78679 >seq5140 Length=69470 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || || |||||||| | |||||||||||| ||| || ||||| |||||||||| Sbjct 6291 AGCCGTAAAACCAAATGAACAGTGCTCTCCTTACAAATATTGTAATCAGAAAGTGTTCTT 6232 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | | ||| | |||||||| |||| |||| |||||||| ||| || | ||| | Sbjct 6231 CCATGTTCTAACTGTTTACCTACAAAGATTAGCCGCTGTTGATCCATAGGAATTCCTTTT 6172 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCT-TCGCTCTCCACTTCCACGGT 34667 |||||| || || |||||| | ||| || ||| ||| | || ||||||| | Sbjct 6171 TTGTCTTGAATTTTAAATTTTAAATTTTCAATGGTATCTGTCGGT-TCAACTTCCAGAGA 6113 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| |||||||| |||| |||||||| ||||| |||| Sbjct 6112 TATTGTTTTACCAGTTAGTGTTTTCACTAAAATTCGCAT 6074 Score = 93.3 bits (102), Expect = 3e-14 Identities = 157/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 34483 CCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGT 34542 ||| | || || ||||||||||| | |||||||| || |||||| |||| |||||| Sbjct 6069 CCTTTGAGCCGTAACACCAAATGAACAGTGCTCTTATTCGAAATGTTGTAATTAGAAAGT 6010 Query 34543 GTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACT 34602 |||| | ||||| | | ||||| ||||| || | ||||||| |||| || | | Sbjct 6009 GTTCTTCCATCTTCTAACTTCTTACCTGCAAAGATAAGCTGCTGTTGATCCGTAGGAATT 5950 Query 34603 CCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCT-TCGCTCTCCACTTC 34661 | || |||||| ||| | ||||| | ||| || ||| || | || ||||| Sbjct 5949 CTTTCTTTGTCTTGAATCATAGATTTTACATTTTCAATGGTATCTGACGGT-TCAACTTC 5891 Query 34662 CACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||| |||| ||| || | |||||||| ||||| ||||| Sbjct 5890 CAGCGTTAATGTTTCACCAGTAAGTGTTTTCACTAAAATTTGCAT 5846 >seq6761 Length=90290 Score = 104 bits (114), Expect = 1e-17 Identities = 158/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || || || | ||| ||||||||||| || || | ||||| || |||||||||| Sbjct 70960 AGTCGTAAGACAAGATGCAGAGTGCTCTCGTTCTGTACATTATAGTCAGAAAGTGTTCTT 70901 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 || ||||| | || ||||| ||||| || | | |||||| || || || | ||| ||| Sbjct 70900 TCATCTTCTAACTGATTACCTGCAAAAATAATCCTCTGTTGATCAGGAGGAATTCCTTCC 70841 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCT-TCGCTCTCCACTTCCACGG 34666 |||||| ||| || | ||| ||| || || || ||| || | | |||| || | Sbjct 70840 TTGTCT-TGAATTTGAGATTTTACGTTATCGATGGTATCTGACGGT-ACAACTTGCAGAG 70783 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| |||||||| || | ||||||| ||| || ||||| Sbjct 70782 TTATTGTTTTACCAGTAAGTGTTTTCATAAATATTTGCAT 70743 >seq2947 Length=87168 Score = 96.9 bits (106), Expect = 2e-15 Identities = 159/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | |||||| ||| ||| || || ||||| || || || | ||||| Sbjct 53171 AGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTT 53230 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || ||||||||||| || || || | |||||| ||||| || || | || ||| Sbjct 53231 CCGTCCTCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCTTCC 53290 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGT--CTTCGCTCTCCACTTCCACG 34665 ||||| ||| ||| | ||| || | || |||| ||| | ||| || || | | Sbjct 53291 TTGTCCTGGAT-TTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCT--ACCTCAAGG 53347 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || || || || || | ||||| ||||| |||||||||||| Sbjct 53348 GTGATGGTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCATGTTG 53392 >seq12334 Length=23141 Score = 86.0 bits (94), Expect = 4e-12 Identities = 97/129 (75%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | || |||| |||| |||||| ||| || || || ||||| || |||| Sbjct 1806 CGCCACCACGGAGTCGCAGGACCAGATGGAGCGTGGATTCTTTCTGGATGTTGTAGTCTG 1747 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | || || | | | |||||||||||||| || ||||| || | |||||||||||| || | Sbjct 1746 AGAGGGTCCTCCCATCTTCAAGTTGTTTGCCCGCAAAGATAAGACGCTGTTGGTCTGGTG 1687 Query 34598 GCACTCCCT 34606 | | ||||| Sbjct 1686 G-AATCCCT 1679 >seq995 Length=320003 Score = 86.0 bits (94), Expect = 4e-12 Identities = 97/129 (75%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | || |||| |||| |||||| ||| || || || ||||| || |||| Sbjct 192529 CGCCACCACGGAGTCGCAGGACCAGATGGAGCGTGGATTCTTTCTGGATGTTGTAGTCTG 192470 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | || || | | | |||||||||||||| || ||||| || | |||||||||||| || | Sbjct 192469 AGAGGGTCCTCCCATCTTCAAGTTGTTTGCCCGCAAAGATAAGACGCTGTTGGTCTGGTG 192410 Query 34598 GCACTCCCT 34606 | | ||||| Sbjct 192409 G-AATCCCT 192402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314646904699247