Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2947 120 3e-22 seq5140 86.0 5e-12 seq863 86.0 5e-12 >seq2947 Length=87168 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||||||||| |||||| | || || ||||| || ||||| Sbjct 53160 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 53101 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| ||||| || ||||| ||||| || ||||| || || Sbjct 53100 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 53041 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 |||||| | || | || || || || | || ||| | || |||| ||||| ||||| Sbjct 53040 CAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGAC-GGAAGAACGTTATCCGACTACAA 52982 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || || ||||| || | ||| | || | ||| | || ||||| Sbjct 52981 CATCCAGAAAGAGTCCACACTCCATCTTGTCCTTCGTCTCCGTGGTGG 52934 >seq5140 Length=69470 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||| || || || ||||| || || || || | || |||| ||||| |||||| | Sbjct 6074 ATGCGAATTTTAGTGAAAACACTAACTGGTAAAACAATATCTCTGGAAGTTGAACCGACA 6133 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | | ||| ||||||||||||||| |||| || || |||||| Sbjct 6134 GATACCATTGAAAATTTAAAATTTAAAATTCAAGACAAAAAAGGAATTCCTATGGATCAA 6193 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| |||| | | || ||||| || ||| | | || |||| |||||||| Sbjct 6194 CAGCGGCTAATCTTTGTAGGTAAACAGTTAGAACATGGAAGAACACTTTCTGATTACAAT 6253 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 ||| |||||| || | ||||||||||| || Sbjct 6254 ATTTGTAAGGAGAGCACTGTTCATTTGGTTTTACG 6288 >seq863 Length=118355 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||| || ||||| || | || ||||| ||||| ||||| || Sbjct 78451 ATGCAAATTTTTGTGAAAAAACTTACCGGTAAAACAATAACTCTGGAAGTTGAACCATCA 78392 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | | ||| |||||||||||||| ||||| || || || |||||| Sbjct 78391 GATACCATTGATAACATAAAATCTAAAATTCAAGACAAGGAAGGAATTCCTCCTGATCAA 78332 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 ||| | | || | || || || || || ||||| Sbjct 78331 CAGAGGATTATCTTTGCAGGTAATCAGTTAGAAGA 78297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434801194927680