Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02-
27] 21,559 sequences; 873,088,235 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq2947 120 3e-22
seq5140 86.0 5e-12
seq863 86.0 5e-12
>seq2947
Length=87168
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| ||||||||||| |||||| | || || ||||| || |||||
Sbjct 53160 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 53101
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || |||| |||||| ||||| || ||||| ||||| || ||||| || ||
Sbjct 53100 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 53041
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166
|||||| | || | || || || || | || ||| | || |||| ||||| |||||
Sbjct 53040 CAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGAC-GGAAGAACGTTATCCGACTACAA 52982
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||| || || ||||| || | ||| | || | ||| | || |||||
Sbjct 52981 CATCCAGAAAGAGTCCACACTCCATCTTGTCCTTCGTCTCCGTGGTGG 52934
>seq5140
Length=69470
Score = 86.0 bits (94), Expect = 5e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||| || || || ||||| || || || || | || |||| ||||| |||||| |
Sbjct 6074 ATGCGAATTTTAGTGAAAACACTAACTGGTAAAACAATATCTCTGGAAGTTGAACCGACA 6133
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | | ||| ||||||||||||||| |||| || || ||||||
Sbjct 6134 GATACCATTGAAAATTTAAAATTTAAAATTCAAGACAAAAAAGGAATTCCTATGGATCAA 6193
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| |||| | | || ||||| || ||| | | || |||| ||||||||
Sbjct 6194 CAGCGGCTAATCTTTGTAGGTAAACAGTTAGAACATGGAAGAACACTTTCTGATTACAAT 6253
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202
||| |||||| || | ||||||||||| ||
Sbjct 6254 ATTTGTAAGGAGAGCACTGTTCATTTGGTTTTACG 6288
>seq863
Length=118355
Score = 86.0 bits (94), Expect = 5e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| |||| || ||||| || | || ||||| ||||| ||||| ||
Sbjct 78451 ATGCAAATTTTTGTGAAAAAACTTACCGGTAAAACAATAACTCTGGAAGTTGAACCATCA 78392
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | | ||| |||||||||||||| ||||| || || || ||||||
Sbjct 78391 GATACCATTGATAACATAAAATCTAAAATTCAAGACAAGGAAGGAATTCCTCCTGATCAA 78332
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142
||| | | || | || || || || || |||||
Sbjct 78331 CAGAGGATTATCTTTGCAGGTAATCAGTTAGAAGA 78297
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434801194927680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |