Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2947 161 2e-34 seq6761 125 2e-23 seq863 122 2e-22 seq5140 116 9e-21 seq2470 114 3e-20 seq3394 89.7 1e-12 >seq2947 Length=87168 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || ||||||||||| |||||||| || || | | || ||||| || Sbjct 52949 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCC 53008 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || ||||| || || || ||||| || |||| |||||||||||| Sbjct 53009 TCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCC 53068 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| || || |||||||||||| ||| ||||| || ||||| ||| Sbjct 53069 TGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTC 53128 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| || ||||| | |||||| Sbjct 53129 TTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 53160 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || ||||||||||| |||||||| || || | | || ||||| || Sbjct 53177 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCC 53236 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || |||||||| || || || ||||| || |||| |||||||||||| Sbjct 53237 TCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCC 53296 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| || || |||||||||||| ||| ||||| || ||||| ||| Sbjct 53297 TGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTC 53356 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || || || ||||| | |||||| || Sbjct 53357 TTGCCAGTCAGTGTTTTGACAAAGATCTGCATGTT 53391 >seq6761 Length=90290 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| || |||||| || |||||| ||| || || | ||||| || | ||| || Sbjct 70964 ACGTAGTCGTAAGACAAGATGCAGAGTGCTCTCGTTCTGTACATTATAGTCAGAAAGTGT 70905 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||| ||||||| | ||| || ||||| || |||| | ||||| |||||||||| ||| Sbjct 70904 TCTTTCATCTTCTAACTGATTACCTGCAAAAATAATCCTCTGTTGATCAGGAGGAATTCC 70845 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || || | ||| ||||| |||||||| || || | |||| | || Sbjct 70844 TTCCTTGTCTTGAATTTGAGATTTTACGTTATCGATGGTATCTGACGGTACAACTTGCAG 70785 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || || || || || || || | ||| | ||||| Sbjct 70784 AGTTATTGTTTTACCAGTAAGTGTTTTCATAAATATTTGCAT 70743 >seq863 Length=118355 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| || ||||| |||||| ||| || || | ||||| || | ||| || Sbjct 78230 ACGTAGTCGTAAAACAAGTAACAGAGTGCTCTCCTTCTGAACATTATAGTCAGAAAGTGT 78289 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||| ||||||| | ||| || ||||| ||||||| | ||||| |||||||||| ||| Sbjct 78290 TCTTTCATCTTCTAACTGATTACCTGCAAAGATAATCCTCTGTTGATCAGGAGGAATTCC 78349 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || || || ||| | ||| || ||||| || || |||||| || || Sbjct 78350 TTCCTTGTCTTGAATTTTAGATTTTATGTTATCAATGGTATCTGATGGTTCAACTTCCAG 78409 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || || || || || | || ||||| | ||||| Sbjct 78410 AGTTATTGTTTTACCGGTAAGTTTTTTCACAAAAATTTGCAT 78451 >seq5140 Length=69470 Score = 116 bits (128), Expect = 9e-21 Identities = 158/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 210898 GTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTC 210957 ||| || |||||| || |||||| ||| || || || ||||| || | ||| || ||| Sbjct 7433 GTCGTAAGACAAGATGCAGAGTGCTCTCCTTCTGTATATTATAGTCAGAAAGTGTTGTTC 7374 Query 210958 CATCTTC---CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTT 211014 ||||||| |||||| ||| |||| ||| | |||||| || ||| ||| ||||| Sbjct 7373 CATCTTCGAACAGCTGACGACCTTTAAAGACAAGCCTTTGTTGATCGGGAAGAATTCCTT 7314 Query 211015 CCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAG 211074 ||||||| || || ||| ||| |||||||| ||||| | || |||||| || |||| Sbjct 7313 CCTTGTCTTGAATTTTTAATTTTACGTTTTCAATGGTATGTGATGGTTCAACTTCTAGAG 7254 Query 211075 TGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| || | || || | || || |||| | ||||| Sbjct 7253 TGATTGTTCTACCAGTAGGTGTTTTCGCAAAAATTTGCAT 7214 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGA--TGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCT 210969 |||| |||| ||||| || || |||| |||| | ||| || ||||||||||| | || Sbjct 6048 TGAACAGTG--CTCTTATTCGAAATGTTGTAATTAGAAAGTGTTCTTCCATCTTCTAACT 5991 Query 210970 GCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCT 211029 ||| ||||| |||||||| | ||||| || | ||||| || ||| ||||| || ||| Sbjct 5990 TCTTACCTGCAAAGATAAGCTGCTGTTGATCCGTAGGAATTCTTTCTTTGTCTTGAATCA 5931 Query 211030 TTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCG 211089 | ||| || ||||| ||||| || || |||||| || || || | || | || | Sbjct 5930 TAGATTTTACATTTTCAATGGTATCTGACGGTTCAACTTCCAGCGTTAATGTTTCACCAG 5871 Query 211090 TGAGAGTCTTTACAAACACCTGCAT 211114 | || || || || || | ||||| Sbjct 5870 TAAGTGTTTTCACTAAAATTTGCAT 5846 Score = 87.8 bits (96), Expect = 4e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 210947 AAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 ||| || ||||||||||| | || ||| ||||| |||||||| | ||||| || | ||| Sbjct 6469 AAGTGTTCTTCCATCTTCTAACTTCTTACCTGCAAAGATAAGCTGCTGTTGATCCGTAGG 6410 Query 211007 AACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAAC 211066 || |||||| ||||| || || || ||| | ||||| ||||| || | |||||| Sbjct 6409 AATTCCTTCTTTGTCTTGAATTTTAAATTTTAAATTTTCAATGGTATCTGTCGGTTCAAC 6350 Query 211067 CTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||| || || || || || | || || || | || ||||| Sbjct 6349 TTCCAGAGATATTGTTTTACCAGTAGGTGTTTTCACTATCATTTGCAT 6302 >seq2470 Length=135016 Score = 114 bits (126), Expect = 3e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || ||||||||||| |||||||| || || | | || ||||| ||| Sbjct 94235 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCT 94294 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || |||||||| || || || ||||| || |||| |||||||||||| Sbjct 94295 TCAAGTTGCTTACCAGCGAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCC 94354 Query 211023 TGGATCTT 211030 ||||| || Sbjct 94355 TGGATTTT 94362 Score = 84.2 bits (92), Expect = 5e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 || || |||| ||||||||||||||||| || ||| || || |||||||||||| Sbjct 94881 TCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTT 94940 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| ||||| || ||||| ||||| || || || || || ||||| | |||||| || Sbjct 94941 GGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCATGTT 94999 >seq3394 Length=72516 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||||||||| ||||| || || || |||||||| || ||| ||| ||||| Sbjct 11919 CCTTCCTTGTCCTGAATCTTGGACTTGACATTCTCGATGGTATCCGAGGGTTCCACCTCA 11978 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || || ||||| || ||||||||||| | |||||| || Sbjct 11979 AGGGTGATGGTTTTCCCCGTAAGGGTCTTTACAAAGATCTGCATCTT 12025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158831813601035