Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2947 111 1e-19 seq2470 87.8 1e-12 seq5140 86.0 4e-12 >seq2947 Length=87168 Score = 111 bits (122), Expect = 1e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || ||||| || || || || || ||||| || || || || | Sbjct 53391 AACATGCAGATCTTTGTCAAAACACTGACTGGCAAGACCATCACCCTTGAGGTAGAACCA 53332 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | ||| | |||| | ||||| |||||| | || ||||| Sbjct 53331 AGTGACACCATCGAGAATGTCAAATCCAAAA-TCCAGGACAAGGAAGGTATTCCCCCAGA 53273 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||| | || || || || |||||||| || |||| | | || ||| ||| || Sbjct 53272 CCAGCAGCGTCTCATCTTCGCTGGTAAACAACTAGAGGACGGAAGAACATTATCCGACTA 53213 Query 23787 CAACATACAAAAAGAGTCCACATTACAT 23814 |||||| || |||||||||||| | ||| Sbjct 53212 CAACATCCAGAAAGAGTCCACACTCCAT 53185 Score = 105 bits (116), Expect = 5e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| || || || || || ||||| || || || || | | Sbjct 53160 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 53101 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | |||| | ||||| |||||| | || ||||| || Sbjct 53100 GACACCATCGAGAATGTCAAATCCAAAA-TCCAGGACAAGGAAGGTATTCCACCAGACCA 53042 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || || || || |||| | | || ||| ||| ||||| Sbjct 53041 GCAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGACGGAAGAACGTTATCCGACTACAA 52982 Query 23790 CATACAAAAAGAGTCCACATTACAT 23814 ||| || |||||||||||| | ||| Sbjct 52981 CATCCAGAAAGAGTCCACACTCCAT 52957 >seq2470 Length=135016 Score = 87.8 bits (96), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| |||||| | || ||||| || |||||| | || || || || || ||||| ||| Sbjct 94353 GACAAGGAAGGTATTCCACCAGACCAGCAGCGTCTCATCTTCGCTGGTAAGCAACTTGAA 94294 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACAT 23814 |||| | | || ||| ||| |||||||| || |||||||||||| | ||| Sbjct 94293 GACGGAAGAACGTTATCCGACTACAACATCCAGAAAGAGTCCACACTCCAT 94243 >seq5140 Length=69470 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||| ||||| || ||||| || || || ||||| || |||| |||||||| | || Sbjct 6074 ATGCGAATTTTAGTGAAAACACTAACTGGTAAAACAATATCTCTGGAAGTTGAACCGACA 6133 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| |||||| |||||| |||||| |||| | || |||||| Sbjct 6134 GATACCATTGAAAATTTAAAATTTAAAATTCAAGACAAAAAAGGAATTCCTATGGATCAA 6193 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTACA 23788 ||||| |||| |||| || ||||| | ||| | | | | |||||| ||||||| Sbjct 6194 CAGCGGCTAATCTTTGTAGGTAAACAGTTAGAACATGGAAGAACACTTT--CTGATTACA 6251 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGG 23826 | || || ||| ||| | ||||| |||||| || Sbjct 6252 ATATTTGTAAGGAGAGCACTGTTCATTTGGTTTTACGG 6289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337920787871972