Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2947 152 1e-31 seq2470 127 5e-24 seq21413 109 1e-18 seq2338 105 2e-17 seq12334 102 2e-16 seq995 102 2e-16 seq958 102 2e-16 seq6761 89.7 1e-12 seq863 84.2 5e-11 >seq2947 Length=87168 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| ||||| ||||| ||||| |||| ||||| |||| || ||||| || || Sbjct 52949 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCC 53008 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || || || ||||| || ||||||||||||||||| Sbjct 53009 TCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCC 53068 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || || ||| ||||||||||| | ||| || || | ||||| ||| Sbjct 53069 TGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTC 53128 Query 225682 TTGCCCGTCAAAGTTTT 225698 ||||| |||| |||||| Sbjct 53129 TTGCCAGTCAGAGTTTT 53145 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| ||||| ||||| ||||| |||| ||||| |||| || ||||| || || Sbjct 53177 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCC 53236 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 ||||| || || ||||||||||| || || || ||||| || ||||||||||||||||| Sbjct 53237 TCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCC 53296 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || || ||| ||||||||||| | ||| || || | ||||| ||| Sbjct 53297 TGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTC 53356 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||| ||||| | || | ||||| || Sbjct 53357 TTGCCAGTCAGTGTTTTGACAAAGATCTGCATGTT 53391 >seq2470 Length=135016 Score = 127 bits (140), Expect = 5e-24 Identities = 105/128 (82%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| ||||| ||||| ||||| |||| ||||| |||| || ||||| || ||| Sbjct 94235 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCT 94294 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| ||||||||||| || || || ||||| || ||||||||||||||||| Sbjct 94295 TCAAGTTGCTTACCAGCGAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCC 94354 Query 225622 TGGATCTT 225629 ||||| || Sbjct 94355 TGGATTTT 94362 >seq21413 Length=4683 Score = 109 bits (120), Expect = 1e-18 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||| || ||| | | || || || || || |||||||| |||||| | || || Sbjct 196 CCAAGTTTATAAAGTTGTGGTAACAGCCCACGCTTTAGTTATGATATTCTTTATGGTAAT 255 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 ||| | ||||| || || || ||||| ||| | ||||| ||||||| ||||| || || Sbjct 256 GCCAATAATGATCGGGGGATTTGGAAAATGACTGATTCCTCTAATGATAGGTGCCCCGGA 315 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 ||||||||||| | | || || || || || || ||| |||| || ||||| |||| Sbjct 316 CATGGCTTTTCCCCGAATGAAAAAAATGAGATTCTGGTTAATACCTCCCTCCTTTATTCT 375 >seq2338 Length=97083 Score = 105 bits (116), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 225507 AAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAG--TTCTCCCATCTTCT 225564 ||| ||||||||| || || || ||||||||||| | |||| |||| |||||||| Sbjct 92063 AAGATGGAGAGTGCTCTCGTTCTGCACATTGTAATCAG--AAAGTATTCTTCCATCTTCC 92120 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 | | | || |||||||| |||| || ||| | | || ||||| |||| | |||||||| Sbjct 92121 AACAGTTTTCCAGCGAACATAATTCCCTGTAGATAAGGAGGAATGCCTTGCCTGTCTTGG 92180 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 || | |||| ||| ||| ||||| ||||||| |||| || || || ||||| Sbjct 92181 ATTTCGAGCTTAACACTTTCAATGGTATCTGAGGGCGTGACGTTCAAAGTTATTGTCTTA 92240 Query 225685 CCCGTCAAAGTTTTTATGAACACT 225708 || || | ||||| | ||| ||| Sbjct 92241 CCGGTAACTGTTTTCACGAAGACT 92264 >seq12334 Length=23141 Score = 102 bits (112), Expect = 2e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| |||||| || ||||| ||||||||||| |||| ||||| || | | || Sbjct 1799 ACGGAGTCGCAGGACCAGATGGAGCGTGGATTCTTTCTGGATGTTGTAGTCTGAGAGGGT 1740 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||||||||||| || || || || || |||||||| || |||||||| || ||||| || Sbjct 1739 CCTCCCATCTTCAAGTTGTTTGCCCGCAAAGATAAGACGCTGTTGGTCTGGTGGAATCCC 1680 Query 225612 T 225612 | Sbjct 1679 T 1679 >seq995 Length=320003 Score = 102 bits (112), Expect = 2e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| |||||| || ||||| ||||||||||| |||| ||||| || | | || Sbjct 192522 ACGGAGTCGCAGGACCAGATGGAGCGTGGATTCTTTCTGGATGTTGTAGTCTGAGAGGGT 192463 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||||||||||| || || || || || |||||||| || |||||||| || ||||| || Sbjct 192462 CCTCCCATCTTCAAGTTGTTTGCCCGCAAAGATAAGACGCTGTTGGTCTGGTGGAATCCC 192403 Query 225612 T 225612 | Sbjct 192402 T 192402 >seq958 Length=135778 Score = 102 bits (112), Expect = 2e-16 Identities = 149/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 225507 AAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAG--TTCTCCCATCTTCT 225564 ||| ||||||||| || || || ||||||||||| | |||| |||| |||||||| Sbjct 96582 AAGATGGAGAGTGCTCTCGTTCTGCACATTGTAATCAG--AAAGTATTCTTCCATCTTCC 96639 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 | | | || || ||| | |||| || ||| | | || ||||| |||| | |||||||| Sbjct 96640 AACAGTTTTCCGGCGTAAATAATTCCCTGTAGATAAGGAGGAATGCCTTGCCTGTCTTGG 96699 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 || | |||| ||| ||| ||||| ||||||| |||| || || || ||||| Sbjct 96700 ATTTCGAGCTTAACACTTTCAATGGTATCTGAGGGCGTGACGTTCAAAGTTATTGTCTTA 96759 Query 225685 CCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || | ||||| | ||| ||||| || Sbjct 96760 CCGGTAACTGTTTTCACGAAGACTTGAAT 96788 >seq6761 Length=90290 Score = 89.7 bits (98), Expect = 1e-12 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| | |||||| || |||||| || || || ||||| || || | | || Sbjct 70964 ACGTAGTCGTAAGACAAGATGCAGAGTGCTCTCGTTCTGTACATTATAGTCAGAAAGTGT 70905 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| ||||||||| ||| || || || || |||| | ||||| || || ||||| || Sbjct 70904 TCTTTCATCTTCTAACTGATTACCTGCAAAAATAATCCTCTGTTGATCAGGAGGAATTCC 70845 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| || | || || |||||||| ||||| | | | || | | Sbjct 70844 TTCCTTGTCTTGAATTTGAGATTTTACGTTATCGATGGTATCTGACGGTACAACTTGCAG 70785 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || || | ||||| || || | |||||| Sbjct 70784 AGTTATTGTTTTACCAGTAAGTGTTTTCATAAATATTTGCAT 70743 >seq863 Length=118355 Score = 84.2 bits (92), Expect = 5e-11 Identities = 133/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 225514 AGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTC 225573 |||||| || || || ||||| || || | | ||||| ||||||||| ||| || Sbjct 78252 AGAGTGCTCTCCTTCTGAACATTATAGTCAGAAAGTGTTCTTTCATCTTCTAACTGATTA 78311 Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || ||||||| | ||||| || || ||||| |||||||||||||| || ||| | Sbjct 78312 CCTGCAAAGATAATCCTCTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT-TTTAGA 78370 Query 225634 TTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 || | | || ||||| ||||| | ||| || || | || || || || || || | Sbjct 78371 TTTTATGTTATCAATGGTATCTGATGGTTCAACTTCCAGAGTTATTGTTTTACCGGT--A 78428 Query 225693 AGTTTTT 225699 ||||||| Sbjct 78429 AGTTTTT 78435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192201793441946