Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq12447 118 9e-22 seq3766 118 9e-22 seq9509 107 2e-18 seq5542 107 2e-18 >seq12447 Length=33603 Score = 118 bits (130), Expect = 9e-22 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 4863 TCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAA 4922 || ||||| |||||||| ||||||||||||| |||||| || || |||||||| | || | Sbjct 24785 TCCATAGCTATCTGAAAGCCGTAAAAGCATCGAGCTTCCGTAACCTGAACTTCCTGACTA 24726 Query 4923 AATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACA 4982 ||||| || || | |||||| || || || || || ||||| ||||| || || | || Sbjct 24725 AATCTCTCCACCAGGTTTTCATTGACGATTCCATCGCTGGCCGCAAAGAAAGCTAGAATG 24666 Query 4983 TGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTT 5017 |||||||| |||| ||| || |||| ||||| Sbjct 24665 TGAGATATGAAGTGGACTTCTTCTGGCTGTAGTTT 24631 >seq3766 Length=89028 Score = 118 bits (130), Expect = 9e-22 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 4863 TCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAA 4922 || ||||| |||||||| ||||||||||||| |||||| || || |||||||| | || | Sbjct 53996 TCCATAGCTATCTGAAAGCCGTAAAAGCATCGAGCTTCCGTAACCTGAACTTCCTGACTA 54055 Query 4923 AATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACA 4982 ||||| || || | |||||| || || || || || ||||| ||||| || || | || Sbjct 54056 AATCTCTCCACCAGGTTTTCATTGACGATTCCATCGCTGGCCGCAAAGAAAGCTAGAATG 54115 Query 4983 TGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTT 5017 |||||||| |||| ||| || |||| ||||| Sbjct 54116 TGAGATATGAAGTGGACTTCTTCTGGCTGTAGTTT 54150 >seq9509 Length=48202 Score = 107 bits (118), Expect = 2e-18 Identities = 160/226 (71%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || || |||||||| ||||||||||| || || | || |||||||| || | || || Sbjct 29290 TCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCTTG 29231 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| || || || |||||||| || || || || ||||| || || |||||||| ||| Sbjct 29230 AGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGGCT 29171 Query 4692 ACTAATCGGGACCCGAACGAGCTGG---CTTTGTCTTTAATCCATTTTAATGCCCAGTTA 4748 || | || | | || |||| |||||| | ||||| || | ||||||| | Sbjct 29170 ACCACACGTTCGCTGTAC---CTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCA 29114 Query 4749 GCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATT 4794 || || ||||| || || || || | || ||||| ||||||| Sbjct 29113 GCCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCGTTGAATAATT 29068 Score = 82.4 bits (90), Expect = 7e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 4938 TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTAC 4997 |||||||| || || |||||||||||||| || || || | |||||| | ||||| | Sbjct 27925 TTTTCGTTCACGATGCCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAAAGTGC 27866 Query 4998 TGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCA 5057 ||||| | || || || | ||||| || |||||| | | ||| || || || Sbjct 27865 TGTTCTTGCGGTTTCAGCCCCTCCCAGTCCTTCATATCTTTTGAGAGATCGACCTCCTCG 27806 Query 5058 ACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACT 5112 | ||||| || || ||||| || || |||||||| ||| || || |||||| Sbjct 27805 GCTGTCCAGAAAGAAGCTTCTGCCTTCTTGTACATTCTCCATATGTCCTGATACT 27751 >seq5542 Length=71200 Score = 107 bits (118), Expect = 2e-18 Identities = 160/226 (71%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || || |||||||| ||||||||||| || || | || |||||||| || | || || Sbjct 64597 TCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCTTG 64538 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| || || || |||||||| || || || || ||||| || || |||||||| ||| Sbjct 64537 AGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGGCT 64478 Query 4692 ACTAATCGGGACCCGAACGAGCTGG---CTTTGTCTTTAATCCATTTTAATGCCCAGTTA 4748 || | || | | || |||| |||||| | ||||| || | ||||||| | Sbjct 64477 ACCACACGTTCGCTGTAC---CTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCA 64421 Query 4749 GCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATT 4794 || || ||||| || || || || | || ||||| ||||||| Sbjct 64420 GCCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCGTTGAATAATT 64375 Score = 82.4 bits (90), Expect = 7e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 4938 TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTAC 4997 |||||||| || || |||||||||||||| || || || | |||||| | ||||| | Sbjct 63270 TTTTCGTTCACGATGCCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAAAGTGC 63211 Query 4998 TGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCA 5057 ||||| | || || || | ||||| || |||||| | | ||| || || || Sbjct 63210 TGTTCTTGCGGTTTCAGCCCCTCCCAGTCCTTCATATCTTTTGAGAGATCGACCTCCTCG 63151 Query 5058 ACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACT 5112 | ||||| || || ||||| || || |||||||| ||| || || |||||| Sbjct 63150 GCTGTCCAGAAAGAAGCTTCTGCCTTCTTGTACATTCTCCATATGTCCTGATACT 63096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426937392584147