Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq9509 140 5e-28 seq5542 140 5e-28 seq1416 93.3 6e-14 >seq9509 Length=48202 Score = 140 bits (154), Expect = 5e-28 Identities = 162/218 (74%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||| || ||||| | ||||||||| ||||| || || ||||||| ||||||||| ||| Sbjct 29290 TCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCTTG 29231 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||| || ||||| || || ||||| || || || ||||| || || || ||||| || Sbjct 29230 AGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGGCT 29171 Query 48285 GTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCC 48341 | | || | ||| |||||| | ||||| |||||| | ||||| |||||| Sbjct 29170 ACCACACGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCAGCC 29111 Query 48342 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 |||||||||||| || || ||||| || || || || Sbjct 29110 TTCTTCTTTACAGCTGGTATGGTTTCGATGGCGTTGAA 29073 Score = 111 bits (122), Expect = 2e-19 Identities = 148/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582 ||| ||| || || || || || ||||| || || || || |||| |||||||||| || Sbjct 27930 CCAGATTTTCGTTCACGATGCCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAA 27871 Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 48642 | | | ||| | | |||| | |||||| || ||||||||||| | ||| || | Sbjct 27870 AGTGCTGTTCTTGCGGTTTCAGCCCCTCCCAGTCCTTCATATCTTTTGAGAGATCGACCT 27811 Query 48643 CTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTG-TAT 48701 | || |||||||| || || || ||||| || || ||||| ||||||| || ||| || Sbjct 27810 CCTCGGCTGTCCAGAAAGAAGCTTCTGCCTTCTTGTACATTCTCCATATGTC-CTGATAC 27752 Query 48702 TGGATTGGGAAAATAACAAATCT 48724 | ||| ||||||| |||||| || Sbjct 27751 TCGATAGGGAAAAGAACAAACCT 27729 Score = 89.7 bits (98), Expect = 7e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||||||||||||||| || | ||||| || |||||||||||||| |||| ||| || || Sbjct 30405 TTTTTGATATTCACCTACTCTCTTCTCAAAGAAATTAGTTTTGCCCTCCAGTGAAATGTT 30346 Query 47909 TTCCATAAAATCAAATGGATTA 47930 ||||| |||||||| |||||| Sbjct 30345 CTCCATGAAATCAAAAGGATTA 30324 >seq5542 Length=71200 Score = 140 bits (154), Expect = 5e-28 Identities = 162/218 (74%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||| || ||||| | ||||||||| ||||| || || ||||||| ||||||||| ||| Sbjct 64597 TCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCTTG 64538 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||| || ||||| || || ||||| || || || ||||| || || || ||||| || Sbjct 64537 AGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGGCT 64478 Query 48285 GTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCC 48341 | | || | ||| |||||| | ||||| |||||| | ||||| |||||| Sbjct 64477 ACCACACGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCAGCC 64418 Query 48342 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 |||||||||||| || || ||||| || || || || Sbjct 64417 TTCTTCTTTACAGCTGGTATGGTTTCGATGGCGTTGAA 64380 Score = 111 bits (122), Expect = 2e-19 Identities = 148/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582 ||| ||| || || || || || ||||| || || || || |||| |||||||||| || Sbjct 63275 CCAGATTTTCGTTCACGATGCCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAA 63216 Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 48642 | | | ||| | | |||| | |||||| || ||||||||||| | ||| || | Sbjct 63215 AGTGCTGTTCTTGCGGTTTCAGCCCCTCCCAGTCCTTCATATCTTTTGAGAGATCGACCT 63156 Query 48643 CTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTG-TAT 48701 | || |||||||| || || || ||||| || || ||||| ||||||| || ||| || Sbjct 63155 CCTCGGCTGTCCAGAAAGAAGCTTCTGCCTTCTTGTACATTCTCCATATGTC-CTGATAC 63097 Query 48702 TGGATTGGGAAAATAACAAATCT 48724 | ||| ||||||| |||||| || Sbjct 63096 TCGATAGGGAAAAGAACAAACCT 63074 Score = 89.7 bits (98), Expect = 7e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||||||||||||||| || | ||||| || |||||||||||||| |||| ||| || || Sbjct 65714 TTTTTGATATTCACCTACTCTCTTCTCAAAGAAATTAGTTTTGCCCTCCAGTGAAATGTT 65655 Query 47909 TTCCATAAAATCAAATGGATTA 47930 ||||| |||||||| |||||| Sbjct 65654 CTCCATGAAATCAAAAGGATTA 65633 >seq1416 Length=111358 Score = 93.3 bits (102), Expect = 6e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 || |||||||| || | ||||| | ||||| || |||||||| ||||| || | ||| Sbjct 39446 TGGAATTCTCCGGAAAGAACTCTTCTGGTGTAGATGTTACTGGTGTATGGCTCTATGGAT 39387 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||||||||| | || || || || || || |||||||| || || | || | ||| Sbjct 39386 TCATTGTTTCCGAGGATCTGGGCCGTGGAGGCTGTTGGCATTGGGGCTAACAGGAGACTG 39327 Query 77247 TTTCTGAGACCATG-TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGA 77305 || | || || || ||| || || || |||| || | ||||| || || || |||| Sbjct 39326 TTACGTAGGCCGTGCTGTGCT-ATCTTGGCTTTCAGGGACTTCCAGTCACAGAGGTCTGT 39268 Query 77306 AGGTACAACATCCCA 77320 ||| |||||||| Sbjct 39267 TGGTGTTACATCCCA 39253 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 78742 CACTAAATAGtttttttG-TTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGA 78800 |||| || |||||| ||| |||||||||| || ||||| ||||||||||| || |||| Sbjct 32216 CACTGAA-AGTTTTCTTGGTTTCCTTGTGCAGGTTAGAAACAGCTATTCTGGCTGCTAAG 32158 Query 78801 ATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCT 78860 || ||||| || ||||| | || || || || || | || ||||| || |||| Sbjct 32157 ATTGCATAGTCTGGATGCTTGGTTGTCATGGTAGCCGCAGTCTCAGCCGCCAAGGTATCC 32098 Query 78861 AACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGAT 78913 | || | || |||||||||| || | || | || |||||||| | ||| Sbjct 32097 AGTTCAACTGTGGTGACCCCATGGTAGATACCATTTATCACTTTCATTGTGAT 32045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694481595441760