Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq9509 118 2e-21 seq5542 118 2e-21 seq1416 96.9 5e-15 >seq9509 Length=48202 Score = 118 bits (130), Expect = 2e-21 Identities = 149/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 || ||| || ||||| || || ||||| || || || || || | |||||||||| ||| Sbjct 27929 CAGATTTTCGTTCACGATGCCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAAA 27870 Query 47073 ATATTTTTCAT-CGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 47131 | | ||| | |||| |||| | |||||| || ||||||||||| | ||| || | Sbjct 27869 GTGCTGTTCTTGCGGTT-TCAGCCCCTCCCAGTCCTTCATATCTTTTGAGAGATCGACCT 27811 Query 47132 CTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATT 47191 | || ||||||||||| || || ||||| || || ||||| ||||||| || |||| | Sbjct 27810 CCTCGGCTGTCCAGAAAGAAGCTTCTGCCTTCTTGTACATTCTCCATATGTCCTGATACT 27751 Query 47192 GGATCGGAAAAATAACAAATCT 47213 ||| || |||| |||||| || Sbjct 27750 CGATAGGGAAAAGAACAAACCT 27729 Score = 96.9 bits (106), Expect = 5e-15 Identities = 93/117 (79%), Gaps = 3/117 (3%) Strand=Plus/Minus Query 46314 ATCTTCTT-GT--GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAA 46370 |||||||| || ||||| | || |||||| ||||||||||| | ||||| || || Sbjct 30432 ATCTTCTTTGTTCGACATGATGCCTGCTTTTTGATATTCACCTACTCTCTTCTCAAAGAA 30373 Query 46371 ATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATT 46427 |||||||||||| |||| ||| || || ||||| |||||||| |||||| |||| || Sbjct 30372 ATTAGTTTTGCCCTCCAGTGAAATGTTCTCCATGAAATCAAAAGGATTACTAACCTT 30316 >seq5542 Length=71200 Score = 118 bits (130), Expect = 2e-21 Identities = 149/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 || ||| || ||||| || || ||||| || || || || || | |||||||||| ||| Sbjct 63274 CAGATTTTCGTTCACGATGCCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAAA 63215 Query 47073 ATATTTTTCAT-CGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 47131 | | ||| | |||| |||| | |||||| || ||||||||||| | ||| || | Sbjct 63214 GTGCTGTTCTTGCGGTT-TCAGCCCCTCCCAGTCCTTCATATCTTTTGAGAGATCGACCT 63156 Query 47132 CTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATT 47191 | || ||||||||||| || || ||||| || || ||||| ||||||| || |||| | Sbjct 63155 CCTCGGCTGTCCAGAAAGAAGCTTCTGCCTTCTTGTACATTCTCCATATGTCCTGATACT 63096 Query 47192 GGATCGGAAAAATAACAAATCT 47213 ||| || |||| |||||| || Sbjct 63095 CGATAGGGAAAAGAACAAACCT 63074 Score = 96.9 bits (106), Expect = 5e-15 Identities = 93/117 (79%), Gaps = 3/117 (3%) Strand=Plus/Minus Query 46314 ATCTTCTT-GT--GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAA 46370 |||||||| || ||||| | || |||||| ||||||||||| | ||||| || || Sbjct 65741 ATCTTCTTTGTTCGACATGATGCCTGCTTTTTGATATTCACCTACTCTCTTCTCAAAGAA 65682 Query 46371 ATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATT 46427 |||||||||||| |||| ||| || || ||||| |||||||| |||||| |||| || Sbjct 65681 ATTAGTTTTGCCCTCCAGTGAAATGTTCTCCATGAAATCAAAAGGATTACTAACCTT 65625 >seq1416 Length=111358 Score = 96.9 bits (106), Expect = 5e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || |||||||| || | ||||||| ||||| || |||||||| ||||| || | ||| Sbjct 39446 TGGAATTCTCCGGAAAGAACTCTTCTGGTGTAGATGTTACTGGTGTATGGCTCTATGGAT 39387 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||||||||| | || || || || || || || ||||| || || | || | ||| Sbjct 39386 TCATTGTTTCCGAGGATCTGGGCCGTGGAGGCTGTTGGCATTGGGGCTAACAGGAGACTG 39327 Query 75842 TTTCTGAGACCATG-TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGA 75900 || | || || || ||| || || || |||| || | ||||| || || || |||| Sbjct 39326 TTACGTAGGCCGTGCTGTGCT-ATCTTGGCTTTCAGGGACTTCCAGTCACAGAGGTCTGT 39268 Query 75901 TGGTACAACATCCCA 75915 |||| |||||||| Sbjct 39267 TGGTGTTACATCCCA 39253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712742273090880