Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02-
27] 21,559 sequences; 873,088,235 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq2947 147 5e-30
seq2470 105 2e-17
>seq2947
Length=87168
Score = 147 bits (162), Expect = 5e-30
Identities = 166/221 (75%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||||||||| || || |||||||| ||||||||||| |||| ||| ||||| || ||
Sbjct 53177 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCC 53236
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
||||| ||| || |||||||| || | ||||||||| | | || |||||||| ||
Sbjct 53237 TCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCC 53296
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| ||||| ||||||| |||| | | |||| ||| ||||| ||||| || ||
Sbjct 53297 TGGATTTTGGATTTGACATTCTCGATGGTGTC---ACTTGGTTCTACCTCAAGGGTGATG 53353
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110
|| ||||| || || || || || |||| |||||| || ||
Sbjct 53354 GTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCATGTTGCC 53394
Score = 136 bits (150), Expect = 9e-27
Identities = 160/215 (74%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||||||||| || || |||||||| ||||||||||| |||| ||| ||||| || ||
Sbjct 52949 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCC 53008
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || ||||| || | ||||||||| | | || |||||||| ||
Sbjct 53009 TCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCC 53068
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| ||||| ||||||| |||| | | |||| ||| ||||| ||||| || ||
Sbjct 53069 TGGATTTTGGATTTGACATTCTCGATGGTGTC---ACTTGGTTCTACCTCAAGGGTGATG 53125
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| || ||||| || || |||| ||||||
Sbjct 53126 GTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 53160
>seq2470
Length=135016
Score = 105 bits (116), Expect = 2e-17
Identities = 100/128 (78%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||||||||| || || |||||||| ||||||||||| |||| ||| ||||| || |||
Sbjct 94235 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCT 94294
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || |||||||| || | ||||||||| | | || |||||||| ||
Sbjct 94295 TCAAGTTGCTTACCAGCGAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCC 94354
Query 152013 TGAATTTT 152020
|| |||||
Sbjct 94355 TGGATTTT 94362
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153502086210089
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |