Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2947 147 5e-30 seq2470 105 2e-17 >seq2947 Length=87168 Score = 147 bits (162), Expect = 5e-30 Identities = 166/221 (75%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || |||||||| ||||||||||| |||| ||| ||||| || || Sbjct 53177 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCC 53236 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| ||| || |||||||| || | ||||||||| | | || |||||||| || Sbjct 53237 TCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCC 53296 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| ||||||| |||| | | |||| ||| ||||| ||||| || || Sbjct 53297 TGGATTTTGGATTTGACATTCTCGATGGTGTC---ACTTGGTTCTACCTCAAGGGTGATG 53353 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 || ||||| || || || || || |||| |||||| || || Sbjct 53354 GTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCATGTTGCC 53394 Score = 136 bits (150), Expect = 9e-27 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || |||||||| ||||||||||| |||| ||| ||||| || || Sbjct 52949 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCC 53008 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| || | ||||||||| | | || |||||||| || Sbjct 53009 TCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCC 53068 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| ||||||| |||| | | |||| ||| ||||| ||||| || || Sbjct 53069 TGGATTTTGGATTTGACATTCTCGATGGTGTC---ACTTGGTTCTACCTCAAGGGTGATG 53125 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || ||||| || || |||| |||||| Sbjct 53126 GTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 53160 >seq2470 Length=135016 Score = 105 bits (116), Expect = 2e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || |||||||| ||||||||||| |||| ||| ||||| || ||| Sbjct 94235 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCT 94294 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| || | ||||||||| | | || |||||||| || Sbjct 94295 TCAAGTTGCTTACCAGCGAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCC 94354 Query 152013 TGAATTTT 152020 || ||||| Sbjct 94355 TGGATTTT 94362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153502086210089