Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2947 147 5e-30 seq6761 102 2e-16 seq12334 100 6e-16 seq995 100 6e-16 seq863 98.7 2e-15 seq2470 96.9 7e-15 >seq2947 Length=87168 Score = 147 bits (162), Expect = 5e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| || ||||| | ||| ||||| |||||||||||||| | Sbjct 53161 ACCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGA 53220 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || | || |||||||||||||| || || ||||| | ||| || ||||| || Sbjct 53221 TAATGTTCTTCCGTCCTCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGGGG 53280 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| |||||||| ||||| || | ||| || | ||||| ||||| | ||| || Sbjct 53281 AATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTAC 53340 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||| ||||| || |||| || || || || |||||||| || Sbjct 53341 CTCAAGGGTGATGGTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCATGTT 53391 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| || ||||| | ||| ||||| |||||||||||||| | Sbjct 52934 CCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGAT 52993 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||| | || ||||| || || || || |||||||| | ||| || ||||| ||| Sbjct 52994 AACGTTCTTCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGA 53053 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| |||||||| ||||| || | ||| || | ||||| ||||| | ||| || Sbjct 53054 ATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACC 53113 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || |||| ||| || || || |||||||| Sbjct 53114 TCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 53160 >seq6761 Length=90290 Score = 102 bits (112), Expect = 2e-16 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 282874 CACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAA 282933 || |||| || || | || ||||| | ||||| || || || | || ||||||| || Sbjct 70968 CATCACGTAGTCGTAAGACAAGATGCAGAGTGCTCTCGTTCTGTACATTATAGTCAGAAA 70909 Query 282934 GCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAA 282993 | || | |||| |||| || || || ||||| || | | ||||| ||| |||| Sbjct 70908 GTGTTCTTTCATCTTCTAACTGATTACCTGCAAAAATAATCCTCTGTTGATCAGGAGGAA 70849 Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 | || ||||||||||| || | | ||||||| ||||||| || || || | | | |||| Sbjct 70848 TTCCTTCCTTGTCTTGAATTTGAGATTTTACGTTATCGATGGTATCTGACGGTACAACTT 70789 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || || ||||| || | || || | ||||| ||||| Sbjct 70788 GCAGAGTTATTGTTTTACCAGTAAGTGTTTTCATAAATATTTGCAT 70743 >seq12334 Length=23141 Score = 100 bits (110), Expect = 6e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || |||||||| | |||| |||||| |||||||||||||| | Sbjct 1804 CCACCACGGAGTCGCAGGACCAGATGGAGCGTGGATTCTTTCTGGATGTTGTAGTCTGAG 1745 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 || || | ||||| || |||||||| || |||||||| | ||| |||||||| Sbjct 1744 AGGGTCCTCCCATCTTCAAGTTGTTTGCCCGCAAAGATAAGACGCTGTTGGTC 1692 >seq995 Length=320003 Score = 100 bits (110), Expect = 6e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || |||||||| | |||| |||||| |||||||||||||| | Sbjct 192527 CCACCACGGAGTCGCAGGACCAGATGGAGCGTGGATTCTTTCTGGATGTTGTAGTCTGAG 192468 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 || || | ||||| || |||||||| || |||||||| | ||| |||||||| Sbjct 192467 AGGGTCCTCCCATCTTCAAGTTGTTTGCCCGCAAAGATAAGACGCTGTTGGTC 192415 >seq863 Length=118355 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 282903 GTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCG 282962 ||||| || || || | || ||||||| ||| || | |||| |||| || || || Sbjct 78255 GTGCTCTCCTTCTGAACATTATAGTCAGAAAGTGTTCTTTCATCTTCTAACTGATTACCT 78314 Query 282963 GCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTT 283022 |||||||| | | ||||| ||| ||||| || ||||||||||| || || | |||| Sbjct 78315 GCAAAGATAATCCTCTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATTTTAGATTTT 78374 Query 283023 ACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTC 283082 | | |||| || || || || | ||| ||||| ||||| || || ||||| || | | Sbjct 78375 ATGTTATCAATGGTATCTGATGGTTCAACTTCCAGAGTTATTGTTTTACCGGTAAGTTTT 78434 Query 283083 TTAACGAATATCTGCAT 283099 || || || || ||||| Sbjct 78435 TTCACAAAAATTTGCAT 78451 >seq2470 Length=135016 Score = 96.9 bits (106), Expect = 7e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| || ||||| | ||| ||||| |||||||||||||| | Sbjct 94220 CCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGAT 94279 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||| | || || || ||||| || || || ||||| | ||| || ||||| ||| Sbjct 94280 AACGTTCTTCCGTCTTCAAGTTGCTTACCAGCGAAGATGAGACGCTGCTGGTCTGGTGGA 94339 Query 282993 ATACCCTCCTTGTCTTGGATCTT 283015 ||||| |||||||| ||||| || Sbjct 94340 ATACCTTCCTTGTCCTGGATTTT 94362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046450064791586