Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq9509 125 7e-24 seq5542 125 7e-24 >seq9509 Length=48202 Score = 125 bits (138), Expect = 7e-24 Identities = 105/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 |||||||| ||||| | ||| ||||| ||||| | |||||||||||||| ||||| || Sbjct 29290 TCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCTTG 29231 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| || ||||||||||||||||| || || || || ||||| ||||| |||||||| Sbjct 29230 AGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGGCT 29171 Query 23653 ACAAGACGT 23661 || | |||| Sbjct 29170 ACCACACGT 29162 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 23779 ATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGA 23838 |||||||| || || |||||||| |||||||| || ||||||||||| || |||||||| Sbjct 28747 ATATATGTGTCGATAAGTAAACTGTACATTTCTGAGTGAATATTTTCGATTGCAATCTGG 28688 Query 23839 AACCCATAAAAACATCTAGCTTCAGA 23864 || || || || || ||||| || || Sbjct 28687 AATCCGTAGAAGCACCTAGCCTCCGA 28662 >seq5542 Length=71200 Score = 125 bits (138), Expect = 7e-24 Identities = 105/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 |||||||| ||||| | ||| ||||| ||||| | |||||||||||||| ||||| || Sbjct 64597 TCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCTTG 64538 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| || ||||||||||||||||| || || || || ||||| ||||| |||||||| Sbjct 64537 AGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGGCT 64478 Query 23653 ACAAGACGT 23661 || | |||| Sbjct 64477 ACCACACGT 64469 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 23779 ATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGA 23838 |||||||| || || |||||||| |||||||| || ||||||||||| || |||||||| Sbjct 64054 ATATATGTGTCGATAAGTAAACTGTACATTTCTGAGTGAATATTTTCGATTGCAATCTGG 63995 Query 23839 AACCCATAAAAACATCTAGCTTCAGA 23864 || || || || || ||||| || || Sbjct 63994 AATCCGTAGAAGCACCTAGCCTCCGA 63969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521347465502600