Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2947 150 4e-31 seq6761 113 1e-19 seq5140 107 5e-18 seq3394 87.8 4e-12 >seq2947 Length=87168 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || |||||||| || || || || |||||||| ||||| ||| ||| Sbjct 53157 CAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGTGAC 53098 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| |||||| || || |||||||| ||||| || || || |||||||| Sbjct 53097 ACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAGCAG 53038 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || |||||||| || ||||| || | |||| || ||| || Sbjct 53037 CGTCTCATCTTTGCTGGTAAGCAGCTCGAGGACGGAAGAACGTTATCCGACTACAACATC 52978 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || ||||| |||||||| Sbjct 52977 CAGAAAGAGTCCACACTCCATCTTGT 52952 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| || || || || || |||||||| ||||| ||| ||| Sbjct 53385 CAGATCTTTGTCAAAACACTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGTGAC 53326 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| |||||| || || |||||||| ||||| || || || |||||||| Sbjct 53325 ACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCCCCAGACCAGCAG 53266 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || ||||| || || || ||||| || | |||| || ||| || Sbjct 53265 CGTCTCATCTTCGCTGGTAAACAACTAGAGGACGGAAGAACATTATCCGACTACAACATC 53206 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || ||||| |||||||| Sbjct 53205 CAGAAAGAGTCCACACTCCATCTTGT 53180 >seq6761 Length=90290 Score = 113 bits (124), Expect = 1e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||||| || || || ||||| || || || | || | | ||||| Sbjct 70746 CAAATATTTATGAAAACACTTACTGGTAAAACAATAACTCTGCAAGTTGTACCGTCAGAT 70805 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| ||| | ||||| ||||| |||||||| ||||| || || || Sbjct 70806 ACCATCGATAACGTAAAATCTCAAATTCAAGACAAGGAAGGAATTCCTCCTGATCAACAG 70865 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | |||| || || || || ||| | ||||||| ||| || ||| | || ||||| || Sbjct 70866 AGGATTATTTTTGCAGGTAATCAGTTAGAAGATGAAAGAACACTTTCTGACTATAATGTA 70925 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || || || ||||||||||| || |||| Sbjct 70926 CAGAACGAGAGCACTCTGCATCTTGTCTTACGACT 70960 >seq5140 Length=69470 Score = 107 bits (118), Expect = 5e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| |||||||| || || || |||| | || || || || ||| ||||| Sbjct 5849 CAAATTTTAGTGAAAACACTTACTGGTGAAACATTAACGCTGGAAGTTGAACCGTCAGAT 5908 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| | |||||| ||||||||| |||| ||| |||| || || Sbjct 5909 ACCATTGAAAATGTAAAATCTATGATTCAAGACAAAGAAAGAATTCCTACGGATCAACAG 5968 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 | |||||||| || || || || | ||||||||||| || ||| | |||| ||| Sbjct 5969 CAGCTTATCTTTGCAGGTAAGAAGTTAGAAGATGGAAGAACACTTTCTAATTACAAC 6025 Score = 107 bits (118), Expect = 5e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| |||||||| || || || | ||| | | || || || ||| ||||| Sbjct 6533 CAAATTTTAGTGAAAACACTTACTGGTAGAACAACATCTCTGGAAGTTGAACCATCAGAT 6592 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| ||| |||||| | |||||||||||||| ||||| || || || Sbjct 6593 ACCATTGAGAACGTAAAATCTAAGATTGAAGACAAAGAAGGAATTCCTCCTGATCAACAG 6652 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATG 178077 | |||||||| || || | |||| | ||||||| Sbjct 6653 CTGCTTATCTTTGCAGGTAGACAGTTAGAAGATG 6686 Score = 102 bits (112), Expect = 2e-16 Identities = 150/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| | |||||| | || || | ||| ||||| || || || ||| ||| | Sbjct 7217 CAAATTTTTGCGAAAACACCTACTGGTAGAACAATCACTCTAGAAGTTGAACCATCACAT 7276 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| ||| ||| ||||| ||||| |||||||| | ||| || || ||| Sbjct 7277 ACCATTGAAAACGTAAAATTAAAAATTCAAGACAAGGAAGGAATTCTTCCCGATCAACAA 7336 Query 178044 CGACTTATCTTCGCCGGAAAACAGCT---CGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 | ||| |||| || ||||| ||||||||||| || ||| | || ||||| Sbjct 7337 AGGCTTGTCTTTAAAGGTCGTCAGCTGTTCGAAGATGGAACAACACTTTCTGACTATAAT 7396 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTT 178132 | || || || || ||||||||||| || Sbjct 7397 ATACAGAAGGAGAGCACTCTGCATCTTGTCTT 7428 Score = 100 bits (110), Expect = 7e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 177921 CTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA 177980 || |||||||| |||||||| | || || |||| | || || | || ||| ||| Sbjct 5618 CTGCAAATTTTAGTGAAAACACCTACTGGTGAAACATTAACTCTGAAAGTTGAACCGTCA 5677 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || ||||| || || || ||| || ||||| |||||||||||||| ||| || | || Sbjct 5678 GATACCATTGAAAAAGTAAAATTTAAAATTCAAGACAAAGAAGGAATTCCTACGAATCAA 5737 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || ||||| | || ||| || | ||| ||||||| || ||| | ||||| ||| Sbjct 5738 CAGCGGCTAATCTTTGTAGGTAAAAAGTTAGAACATGGAAGAACACTTTCTGATTACAAC 5797 Score = 98.7 bits (108), Expect = 2e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||| |||| | || || ||||| || | || || || ||| ||||| Sbjct 6761 CAAATTTTCGTGGAAACACCTACTGGTAAAACAATATCTCTGGAAGTTGAACCGTCAGAT 6820 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||| | ||| |||||||| ||||||| |||||| ||||| | || || Sbjct 6821 ACCATTGAAAACTTAAAATCTAAGATTCAAGACAAAGCAGGAATTCCTCCTCATCAACAG 6880 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATG 178077 | |||||||| || || | |||| | ||||||| Sbjct 6881 CAGCTTATCTTTGCAGGTAGACAGTTAGAAGATG 6914 Score = 98.7 bits (108), Expect = 2e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||| || | || ||||| || | || || || ||| ||||| Sbjct 6989 CAAATTTTAGTAGAAACACTTTCTGGTAAAACAATATCTCTGGACGTTGAACTGTCAGAT 7048 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| |||||||| |||||||||||||| ||||| || || || Sbjct 7049 ACCATTGAAAATGTAAAATCTAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAACAG 7108 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATG 178077 | |||||||| || || | |||| | ||||||| Sbjct 7109 CTGCTTATCTTTGCAGGTAGACAGTTAGAAGATG 7142 Score = 91.5 bits (100), Expect = 4e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| | |||||||| | || || ||||| || | || || || ||| |||| Sbjct 6305 CAAATGATAGTGAAAACACCTACTGGTAAAACAATATCTCTGGAAGTTGAACCGACAGAT 6364 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || | ||| || ||||| |||||||||||||| ||| |||| || || Sbjct 6365 ACCATTGAAAATTTAAAATTTAAAATTCAAGACAAAGAAGGAATTCCTACGGATCAACAG 6424 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTT 178088 | |||||||| || || || || | ||||||||||| || ||| Sbjct 6425 CAGCTTATCTTTGCAGGTAAGAAGTTAGAAGATGGAAGAACACTT 6469 >seq3394 Length=72516 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || ||||| |||||||| ||||||||| ||| || Sbjct 12019 CAGATCTTTGTAAAGACCCTTACGGGGAAAACCATCACCCTTGAGGTGGAACCCTCGGAT 11960 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||||||| ||||| |||||||||||||| ||||| Sbjct 11959 ACCATCGAGAATGTCAAGTCCAAGATTCAGGACAAGGAAGG 11919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203398699725446