Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2947 95.1 1e-14 seq12334 86.0 6e-12 seq995 86.0 6e-12 >seq2947 Length=87168 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || ||| ||| ||||| ||||| |||||||| Sbjct 52934 CCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGAT 52993 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || | |||| ||||||||||| || || || || || ||||| ||||| | ||| Sbjct 52994 AACGTTCTTCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGA 53053 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||||||| |||||| || | | | ||||| || | || ||| Sbjct 53054 ATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACC 53113 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || ||||| || || || || |||||||| Sbjct 53114 TCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 53160 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || ||| ||| ||||| ||||| |||||||| Sbjct 53162 CCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGAT 53221 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || | |||| || || || || || ||||| || || ||||| ||||| | |||| Sbjct 53222 AATGTTCTTCCGTCCTCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGGGGA 53281 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||||||| |||||| || | | | ||||| || | || ||| Sbjct 53282 ATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACC 53341 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || | || || || || || ||||| || || || || ||||||||||| Sbjct 53342 TCAAGGGTGATGGTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCATGTT 53391 >seq12334 Length=23141 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 |||||| || || || || | |||||||| |||||| || ||||| ||||| ||||| Sbjct 1808 ACCGCCACCACGGAGTCGCAGGACCAGATGGAGCGTGGATTCTTTCTGGATGTTGTAGTC 1749 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 |||||||| | | | || || || || ||||| || || || || ||||||||||| | Sbjct 1748 TGAGAGGGTCCTCCCATCTTCAAGTTGTTTGCCCGCAAAGATAAGACGCTGTTGGTCTGG 1689 Query 41752 GGGAA 41756 |||| Sbjct 1688 TGGAA 1684 >seq995 Length=320003 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 |||||| || || || || | |||||||| |||||| || ||||| ||||| ||||| Sbjct 192531 ACCGCCACCACGGAGTCGCAGGACCAGATGGAGCGTGGATTCTTTCTGGATGTTGTAGTC 192472 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 |||||||| | | | || || || || ||||| || || || || ||||||||||| | Sbjct 192471 TGAGAGGGTCCTCCCATCTTCAAGTTGTTTGCCCGCAAAGATAAGACGCTGTTGGTCTGG 192412 Query 41752 GGGAA 41756 |||| Sbjct 192411 TGGAA 192407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462179414850800