Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq131419 98.7 8e-16 seq114 96.9 3e-15 >seq131419 Length=1007 Score = 98.7 bits (108), Expect = 8e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | |||||||| || | || |||||||| || ||||| ||||||| | Sbjct 768 CCACCTCGGAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 827 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCC 21062 ||||| || | || |||||||| ||||| ||| | ||||| |||||||||||| Sbjct 828 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCC 881 >seq114 Length=3964 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045 |||| || ||||| ||||| | |||||| | | ||||||||||| ||||| || | | Sbjct 3085 CCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGA 3026 Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105 |||| | ||||||||| || | ||| |||||||| |||||| ||||| | Sbjct 3025 TAAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCT 2966 Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165 ||| ||| || ||||| || | ||| |||||||| ||||| | || || |||| Sbjct 2965 CGATAGTGTCGGACGGCTCGACCTCGAGGGTGATGGTCTTACCGGTCAGGGTCTTCACAA 2906 Query 21166 ATATTTGCATTTT 21178 | || |||||||| Sbjct 2905 AAATCTGCATTTT 2893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421166304252056