Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq150367 212 6e-50 seq184351 203 3e-47 seq114 123 3e-23 seq142262 120 3e-22 seq93348 102 8e-17 seq178124 96.9 4e-15 >seq150367 Length=3699 Score = 212 bits (234), Expect = 6e-50 Identities = 409/596 (69%), Gaps = 33/596 (6%) Strand=Plus/Minus Query 116627 TACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAG 116686 |||| ||||| ||||| ||||| || || || |||| || |||||||| || ||||| Sbjct 2401 TACCGCGACATATGGCGGATGTAGAAGAAAACCTAGGCATCATTCTGGACAGTTGAGGAA 2342 Query 116687 GTGGACCTGTCCAA---GGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 || ||||| || || |||| | | |||||||| ||| || || | | || Sbjct 2341 GTAGACCTCTCGAAAGAGGACTTGGCCTACTGGGAGAAGCTGAGTGATGACAAAAGACAC 2282 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGG-----CATCGTCAACGAGA 116798 |||||||| ||||| ||||| || || || || ||||| || || |||||| |||| Sbjct 2281 TTCATCAAACACGTCCTGGCATTCTTTGCGGCTAGCGATGGACAACCAACGTCAATGAGA 2222 Query 116799 ATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCT 116858 ||||||| ||| | ||| || ||||| ||||| ||||||| |||||||||| |||| Sbjct 2221 ATCTGGTGGAGAGATTCAGCCAAGAGGTCAAGGTGACCGAGGCCAGGTGCTTCTAGGGCT 2162 Query 116859 TTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACG 116918 | || || |||||||| || | ||||| |||||||| | | |||||||| | | Sbjct 2161 TCCAAATTGCCATGGAAAATATTCACTCTGAAATGTACAGTCTCTTGATCGACACCTTCA 2102 Query 116919 T--GCGCTCTTC-GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCG 116975 | | || | |||| || ||| || | || || || | ||||| | |||||| | Sbjct 2101 TCAAGGATCCACAGGAGAAGGAGCACC---TCTTCAATGCGAATGAGACCACGCCGTGTG 2045 Query 116976 TCAAAG-AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGC 117034 ||||| ||||||| || ||||| || | ||||||| | || | || Sbjct 2044 -CAAAGAAGAAGGCTGAATGGGCTCTTAGATGGATCGGAGACA---ATGC---------- 1999 Query 117035 GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCC 117094 |||| |||| ||||| || || || | | |||| || |||||| || || || Sbjct 1998 -AGCG--TGGTTGCCTTTAATGCGGTGGAAGACATCTTTTTCTCGGGCTCCTTTGCAGCT 1942 Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATC 117154 | ||||||| || || || | ||| |||| ||||| ||| ||| || || ||| Sbjct 1941 AACATTTGGCTGAAAAAGATAGGGATAATG-CCGGGCTGACGTTCTCCAATGAACTGATC 1883 Query 117155 TCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGT 117210 ||||| ||||| || || || |||||||||||| || ||||| |||||||| Sbjct 1882 AGTAGGGATGAGGGCCTACACTGTGACTTTGCCTGTCTGATGTTCGGACATTTGGT 1827 >seq184351 Length=2863 Score = 203 bits (224), Expect = 3e-47 Identities = 255/347 (73%), Gaps = 10/347 (3%) Strand=Plus/Minus Query 116826 TGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACT 116885 ||||||| | |||||||| || ||||| || || |||||||||||||| |||||||||| Sbjct 2495 TGCAGGTTCCGGAGGCGCGCTGTTTCTATGGTTTCCAGATCGCCATGGAAAACGTGCACT 2436 Query 116886 CGGAAATGTATTCGACC--CTCATCGACACGTACGTGCGCTCTTCGGAGGAGA---AGCT 116940 |||| ||||| | || || || |||| ||| | ||| ||| ||| || | Sbjct 2435 CGGAGATGTA--CAGCCTGCTGATTGACAGCTACATCCGCGACCCGGCCGAGCGACAGAT 2378 Query 116941 CCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCT 117000 | |||| ||||| | ||||| ||||||||||| ||||| || |||||||| Sbjct 2377 GC---TGTTCCACGCCGTGGAGACCATGCCGTGCGTGCGGCGCAAGGCGGACTGGGCGCT 2321 Query 117001 GCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGT 117060 || ||||||||| ||| || | | ||||||||||| || ||||||||||| || || Sbjct 2320 GCAGTGGATCGCCAGCAAGGACACGACGTTCGGCGAGCGGCTTGTGGCCTTCGCTGCGGT 2261 Query 117061 CGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCT 117120 |||||||| || || |||||| || || ||||| || ||||| || || ||||| || Sbjct 2260 GGAGGGCGTGTTTTTCTCGGGCTCGTTTGCGGCCATCTTCTGGCTGAAAAAGCGCGGGCT 2201 Query 117121 CATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 | ||||||||||| ||| |||||||| ||| | | ||||||| Sbjct 2200 GCTCCCCGGCCTGACGTTCTCTAACGAGCTGATCAGCCGAGACGAGG 2154 >seq114 Length=3964 Score = 123 bits (136), Expect = 3e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || || || || || || || || ||||||||| |||| ||||| | Sbjct 2893 AAAATGCAGATTTTTGTGAAGACCCTGACCGGTAAGACCATCACCCTCGAGGTCGAGCCG 2952 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | | |||| || || | ||||| ||||||||||| | ||| Sbjct 2953 TCCGACACTATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCAGAC 3012 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| |||||||| || | |||||||| |||||| Sbjct 3013 CAGCAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGACTAC 3072 Query 40867 AACATCCAGAAGG 40879 ||||||||||||| Sbjct 3073 AACATCCAGAAGG 3085 >seq142262 Length=5470 Score = 120 bits (132), Expect = 3e-22 Identities = 150/204 (74%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 116604 GGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGG 116663 |||| || | || ||||| | |||| ||||||||| |||||||||| ||||| | | Sbjct 202 GGTTTGTAGTGTTTCCCATCCGGTACCACGACATGTGGGGCATGTACAAGAAGGCGCAAG 143 Query 116664 CGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCT 116723 | || |||||| | || |||||||| || ||||| ||| |||||| | Sbjct 142 CCTCCTTCTGGTGTGCAGAAGAGGTGGATCTTGGGAAGGATACGGCGGACTGGTTGTCAC 83 Query 116724 TGAA--CGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGA 116781 |||| || | |||||| | |||||| |||||| || || || ||||| |||||||| Sbjct 82 TGAAGCCGGC--CGAGCGGCGGTTCATCTCGCACGTTCTCGCTTTCTTCGCGGCCAGCGA 25 Query 116782 CGGCATCGTCAACGAGAATCTGGT 116805 |||||||||||||||||| ||||| Sbjct 24 CGGCATCGTCAACGAGAACCTGGT 1 >seq93348 Length=6301 Score = 102 bits (112), Expect = 8e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 116780 GACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAG 116839 || || |||||||| || |||||||| ||| | ||| || ||| | |||||||||||| Sbjct 5263 GATGGTATCGTCAATGACAATCTGGTGGAGAGATTCAGCCAAGAGATCCAGGTGGCCGAG 5204 Query 116840 GCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 || |||||||||| ||||| ||||| |||||||| || | || || |||||||| Sbjct 5203 GCCAGGTGCTTCTATGGCTTCCAGATTGCCATGGAAAATATTCAATCTGAAATGTA 5148 >seq178124 Length=5838 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 116780 GACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAG 116839 || || |||||||| || |||||||| ||| | ||| || ||| | |||||||||||| Sbjct 2447 GATGGTATCGTCAATGAAAATCTGGTGGAGAGATTCAGCCAAGAGATCCAGGTGGCCGAG 2388 Query 116840 GCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 || |||||||||| ||||| ||||| |||||||| | | || || |||||||| Sbjct 2387 GCCAGGTGCTTCTATGGCTTCCAGATTGCCATGGAAGATATTCAATCTGAAATGTA 2332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513851511992160