Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq114 118 9e-22 seq184351 109 5e-19 seq195337 100 3e-16 seq150367 98.7 9e-16 >seq114 Length=3964 Score = 118 bits (130), Expect = 9e-22 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||| || ||||| ||||| || || || |||||| |||| || || ||| Sbjct 2893 AAAATGCAGATTTTTGTGAAGACCCTGACCGGTAAGACCATCACCCTCGAGGTCGAGCCG 2952 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| | |||| | || || || || ||||||||| ||| | ||||| ||| Sbjct 2953 TCCGACACTATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCAGAC 3012 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||||| || ||||| ||||| ||| |||| || Sbjct 3013 CAGCAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGA 3050 >seq184351 Length=2863 Score = 109 bits (120), Expect = 5e-19 Identities = 234/346 (68%), Gaps = 8/346 (2%) Strand=Plus/Minus Query 57760 TGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATT 57819 |||| || |||||||| | || || || || || || | ||||| ||||||||||| | Sbjct 2495 TGCAGGTTCCGGAGGCGCGCTGTTTCTATGGTTTCCAGATCGCCATGGAAAACGTGCACT 2436 Query 57820 CAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGAC 57879 | || ||||| || || || || | ||| | ||| | |||| || | | Sbjct 2435 CGGAGATGTACAGCCTGCTGATTGACAGCTACATCCGCGACCCGGCCGAGCGACAGATGC 2376 Query 57880 TGTTCAACGCGATCGAAACAATGCC-CGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAA 57938 ||||| |||| | || || ||||| ||| || | ||||| || ||| | | | Sbjct 2375 TGTTCCACGCCGTGGAGACCATGCCGTGCGTGCGGC-GCAAGGCGGACTGGGCGCTGCAG 2317 Query 57939 TGGATAAAAAGC---GCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTC 57995 ||||| ||| | |||| ||||||| |||| |||| | || ||||| || || Sbjct 2316 TGGATCGCCAGCAAGGACACG---ACGTTCGGCGAGCGGCTTGTGGCCTTCGCTGCGGTG 2260 Query 57996 GAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTG 58055 || || | || || |||||| |||||||| || || ||| |||| || ||||| ||| Sbjct 2259 GAGGGCGTGTTTTTCTCGGGCTCGTTTGCGGCCATCTTCTGGCTGAAAAAGCGCGGGCTG 2200 Query 58056 ATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 | |||||||||||||| |||||| |||| || ||||||| Sbjct 2199 CTCCCCGGCCTGACGTTCTCTAACGAGCTGATCAGCCGAGACGAGG 2154 >seq195337 Length=3657 Score = 100 bits (110), Expect = 3e-16 Identities = 114/151 (75%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| ||| | ||||||||| ||||| ||||| || || ||||||||||| || || Sbjct 2719 ACCTCATCTGGTGCCGTGTACTCCACAATCTCGGTGCAGAGGTTGCTACACTTGATGGTC 2778 Query 23108 CCCAAATTGCTCTGGTTG--CTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 |||| || ||||||| ||| || ||||||| ||||||||| |||||||| || Sbjct 2779 CCCAGGTTTTGCTGGTTGGACTTCTT--GTTGCACGCATCCTTGTACAGCATGTAGGGGT 2836 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 | || ||||| ||| | ||||||||| || Sbjct 2837 TTCCGGTCTCCGTCTGAGCCTCGATGATAGC 2867 >seq150367 Length=3699 Score = 98.7 bits (108), Expect = 9e-16 Identities = 538/846 (64%), Gaps = 47/846 (6%) Strand=Plus/Minus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 ||||| ||| ||||| || || | | ||||| || ||||| || || ||||||||| Sbjct 2395 GACATATGGCGGATGTAGAAGAAAACCTAGGCATCATTCTGGACAGTTGAGGAAGTAGAC 2336 Query 57627 CTGTCTA---AGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATT 57683 || || | |||| || | | ||||| || | || | ||| | || || Sbjct 2335 CTCTCGAAAGAGGACTTGGCCTACTGGGAGAAGCTGAGTGATGACAAAAGACACTTCATC 2276 Query 57684 AAACACGTGTTGGCGTTTTTCGCCGCATCCGATGG-----TATTGTTAACGAGAATTTGG 57738 |||||||| |||| || || || || |||||| | || || |||||| ||| Sbjct 2275 AAACACGTCCTGGCATTCTTTGCGGCTAGCGATGGACAACCAACGTCAATGAGAATCTGG 2216 Query 57739 TCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAG 57798 | || ||||| ||||| || | ||||| ||||| || ||||| || || || ||| Sbjct 2215 TGGAGAGATTCAGCCAAGAGGTCAAGGTGACCGAGGCCAGGTGCTTCTAGGGCTTCCAAA 2156 Query 57799 TGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGG 57858 | ||||| ||||| | || || |||||||| || | ||||| || | | | |||| Sbjct 2155 TTGCCATGGAAAATATTCACTCTGAAATGTACAGTCTCTTGATCGACACCTTCATCAAGG 2096 Query 57859 A-CAACGACGAGAAACGTAG--ACTGTTCAACGCGATCGAAACAATGCCCGCGATC-GCC 57914 | | || | ||||| | || || ||||| |||| || || | | ||| | | Sbjct 2095 ATCCAC-AGGAGAA--GGAGCACCTCTTCAATGCGAATGAGACCACG-CCGTGTGCAAAG 2040 Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGG 57974 |||||||| || ||| | | | |||||| ||| || | || | | || Sbjct 2039 AAGAAGGCTGAATGGGCTCTTAGATGGAT-----------CGGAGACAAT-GCAGCGTGG 1992 Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 | || || || || |||| || || || |||||| |||||| || | || Sbjct 1991 ----TTGCCTTTAATGCGGTGGAAGACATCTTTTTCTCGGGCTCCTTTGCAGCTAACATT 1936 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| |||| || || | ||| |||| |||||||| ||| || |||| | Sbjct 1935 TGGCTGAAAAAGATAGGGATAATG-CCGGGCTGACGTTCTCCAATGAACTGATCAGTAGG 1877 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATT--GTCAATAAAC 58152 || ||||| || || ||| ||||| || || |||| || ||||| || || || | Sbjct 1876 GATGAGGGCCTACACTGTGACTTTGCCTGTCTGATGT--TCGGACATTTGGTTAACAAGC 1819 Query 58153 CGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTG 58212 | | ||| | |||| || || ||| | | || || ||| | | ||||| Sbjct 1818 CTAGTGAGGAGCCCATCCACGAGATCATCGACAATGCCGTGAAGATTGCTCAGGAGTTCC 1759 Query 58213 TCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACA 58272 | || || || || || || || | |||||||| ||||| ||| | | |||| | Sbjct 1758 TGACGGAGGCTCTTCCCCTGAAGCTGATTGGTATGAAAAATGACCTGAGGAAACAGTATA 1699 Query 58273 TTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT-GATTGGAG-AGCGTCATTACAACAC 58330 | | |||||| || | | | || ||| ||||| || || || | || |||||| Sbjct 1698 TCGTGTTTGTAGCAGGCCGGCTATTGGGTGAACTCGAGTGCAGTAAGATC--TACAAC-- 1643 Query 58331 GAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGa 58390 ||||| ||||| || ||| | ||||| || ||||| ||| | ||||| ||||| Sbjct 1642 ----AATCCTTTTGACTTCATGGAGAACATCTCCCTGGAGGGGAAGGCCAACTTCTTCGA 1587 Query 58391 aaaaaa 58396 || || Sbjct 1586 GAAGAA 1581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444583079658720