Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq118491 120 3e-22 seq150367 113 4e-20 >seq118491 Length=654 Score = 120 bits (132), Expect = 3e-22 Identities = 204/296 (69%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 38314 TTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTT 38373 || || |||| || || ||||| | ||| ||||||||||| || |||||||| || || Sbjct 114 TTGGAGATTAGTGCACACTGTTTCAGCGTTTCAAATATACCGTCCATACTGTCCTCTTTC 173 Query 38374 ATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTA 38433 || | || | ||||| || | | ||||| | || || || ||||| | || Sbjct 174 ATAGTCAGCAAGAAACAGCTCGCAAGTTGAGCCTTGTTGGTACCAGCATTAAAGAGGGTC 233 Query 38434 GGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCT 38493 || | |||||||| |||||||| ||||||| | || || ||||| || | | ||| Sbjct 234 GGTGTGGCATGTATAAACCATTTCTCCGACATAAGGTTGTAGGTTTCAATAGCGGCGTCT 293 Query 38494 ATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATT 38553 | ||| | |||||| || || | ||||||||| | ||| |||||||| | || | | Sbjct 294 AAATCTTCAAAGTGAATTCCGAGGGCTACCCTCATCAACATGTGTTGTGGGCGCTCAACT 353 Query 38554 ATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATA 38609 | ||| || ||| ||||| ||||| | |||| ||||| || ||||| || Sbjct 354 ACTTTCCCATCTATTTTGAGTAGGTACGACCTCTCTAGGGTTTTGATGCCAAAGTA 409 >seq150367 Length=3699 Score = 113 bits (124), Expect = 4e-20 Identities = 352/544 (65%), Gaps = 22/544 (4%) Strand=Plus/Plus Query 11612 AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGT 11671 |||||| ||||| | ||| ||||| ||||| |||| || || || ||||| || ||| Sbjct 1830 AAATGTCCGAACATCAGACAGGCAAAGTCACAGTGTAGGCCCTCATCCCTACTGATCAGT 1889 Query 11672 TCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA 11731 ||||| || || || | |||| ||| | ||| ||||| | ||||| |||| ||| Sbjct 1890 TCATTGGAGAACGTCAGCCCGG-CATTATCCCTATCTTTTTCAGCCAAATGTTAGCTGCA 1948 Query 11732 AATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT 11791 || || || || || || || | ||||| || ||| || || || || Sbjct 1949 AAGGAGCCCGAGAAAAAGATGTCTTCCACCGCATTAAAGGCAACCACGCTG--------- 1999 Query 11792 ACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATT 11851 | |||| | |||||| | ||||| ||||| ||||| ||| | || | | Sbjct 2000 -CATTGTCTCCG---ATCCATCTAAGAGCCCATTCAGCCTTCTTCTTTGCACACGGCGTG 2055 Query 11852 GTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATT 11911 || || | || || || | ||| || || ||| | | | || || || Sbjct 2056 GTCTCATTCGCATTGAAGAGGTGCTCCTTCTCCTGTGGATCCTTGATGAAGGTGTCGATC 2115 Query 11912 AATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACAT 11971 || | ||| |||||||| || |||||||||||||| || ||||| || || ||||| || Sbjct 2116 AAGAGACTGTACATTTCAGAGTGAATATTTTCCATGGCAATTTGGAAGCCCTAGAAGCAC 2175 Query 11972 CGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAAT- 12030 | ||||| | || || || ||||| ||| | | ||||||||| || | Sbjct 2176 CTGGCCTCGGTCACCTTGACCTCTTGGCTGAATCTCTCCACCAGATTCTCATTGACGTTG 2235 Query 12031 ----ACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTT 12086 ||||| |||| ||||| ||||| || | ||||| || |||| | ||| ||| | Sbjct 2236 GTTGTCCATCGCTAGCCGCAAAGAATGCCAGGACGTGTTTGATGAAGTGTCTTTTGTCAT 2295 Query 12087 TAGTTAATTTATCCCAATCATCTAA---ATCTTTTGATAAATCTACTTCTTCAACGGTCC 12143 | | | || ||||| | | || ||||| || | |||||||| ||||| |||| Sbjct 2296 CACTCAGCTTCTCCCAGTAGGCCAAGTCCTCTTTCGAGAGGTCTACTTCCTCAACTGTCC 2355 Query 12144 AAAA 12147 | || Sbjct 2356 AGAA 2359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467281065779040