Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq118491 118 1e-21 seq195337 84.2 3e-11 >seq118491 Length=654 Score = 118 bits (130), Expect = 1e-21 Identities = 286/430 (67%), Gaps = 10/430 (2%) Strand=Plus/Plus Query 66252 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 66311 |||| |||||| || | || ||||| || | ||||||||||| || || |||||| Sbjct 9 ACTCGCAACATGGGGAGAAGGCCATTAGAGATTCCATTGGTCCCCGAAATTACGCTTCCT 68 Query 66312 CTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 66371 | || | || || || | || || ||||| || || ||||||| ||| Sbjct 69 GTGGCCCTGATCTTGTGGATGTTGACCCCGATCCCCCCAGCGGACTTGGAGATTAGTGCA 128 Query 66372 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 66431 || |||| | ||| ||| | || || || ||||| || || |||| | || | ||| Sbjct 129 CACTGTTTCAGCGTTTCAAATATACCGTCCATACTGTCCTCTTTCATAGTCAGCAAGAAA 188 Query 66432 CAGCTAGACATTTGGTGACGACTAGTT----CCCGCATTAAATAAGGTAGGAGAAGCGTG 66487 ||||| | | ||| | || ||| || |||||||| | ||| || | || || Sbjct 189 CAGCTCGCAAGTTG----AGCCTTGTTGGTACCAGCATTAAAGAGGGTCGGTGTGGCATG 244 Query 66488 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATT 66546 |||||||||| || || | || ||||| || |||||||| | ||||| ||| || Sbjct 245 TATAAACCATTTCTCCGACATAAGGTTGTAGGTTTCAATAGCGGCGTCTAAATCTTCAAA 304 Query 66547 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 66606 | |||||||| | || || | ||| |||||||| || || | ||||| | || | Sbjct 305 G-TGAATTCCGAGGGCTACCCTCATCAACATGTGTTGTGGGCGCTCAACTACTTTCCCAT 363 Query 66607 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 66666 |||||| | | ||| || | || | ||||| | ||||| || |||| | ||||| Sbjct 364 CTATTTTGAGTAGGTACGACCTCTCTAGGGTTTTGATGCCAAAGTACGTGTACGTAAAGT 423 Query 66667 CTCGTTCGTA 66676 | || ||||| Sbjct 424 CACGGTCGTA 433 >seq195337 Length=3657 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 65790 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 65849 ||||| ||||| || || |||||||||||||| || | ||||| || || ||| ||| Sbjct 2746 ATCTCGGTGCAGAGGTTGCTACACTTGATGGTCCCCAGGTTTTGCTGGTTGGACTTCTTG 2805 Query 65850 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 65909 || ||||||||||| || || ||| | || | || || || |||||| || || || Sbjct 2806 TTGCACGCATCCTTGTACAGCATGTAGGGGTTTCCGGTCTCCGTCTGAGCCTCGATGATA 2865 Query 65910 GCTTTCCAGAC 65920 || | |||||| Sbjct 2866 GCGTACCAGAC 2876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656425630939440