Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq118554 143 2e-29 seq46062 116 3e-21 >seq118554 Length=928 Score = 143 bits (158), Expect = 2e-29 Identities = 187/256 (73%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 20930 ATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGT 20989 ||| ||||| ||| |||||||| ||||| |||| | | || ||||||||||| || | Sbjct 307 ATCGACGTGATTGAGATAAACGTGAGCGTCTCCCAGGCTATGAACAAAGTCTCCAGGCTT 366 Query 20990 CAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGG 21049 | || |||||||| || |||| || ||||| || ||||| || || || || || Sbjct 367 TAATCCTGTGACGTGGGCTATCATGTAGGTCAGCAGACTATAGCTAGCAATATTGAAAGG 426 Query 21050 GACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGC 21109 || ||||| |||||||| |||| | ||||||||| |||||||| ||||| || | Sbjct 427 AACGCCGAGCCCCATGTCCCCGGAGCGCTGGTACAGATGGCAGGAGAGCTCGCCGTTACA 486 Query 21110 CACGTAAAACT-GACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGG 21168 |||||||||| |||| ||| | ||||| || || || | |||| | || || | | Sbjct 487 AACGTAAAACTGGACA-AAAGCATGACAGGGGGGTAGCGTCATCTTAGGCAGATCTGGTG 545 Query 21169 GGTTCCACGCGCACAT 21184 ||||||| ||| |||| Sbjct 546 GGTTCCATGCGGACAT 561 >seq46062 Length=4436 Score = 116 bits (128), Expect = 3e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||| || |||| ||| || |||| || || ||||| | ||||||||||||||| || | Sbjct 427 TCAGTCCAGTGATGTGGGCTATCATGTAGGTGAGGAGAGAGTAGCTGGCGATGTTGAAGG 486 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || |||||| |||| | || | |||||||||||| || |||||||| || | Sbjct 487 GAACGCCAAGGCCCGTGTCTCCAGAGCGCTGGTACAGCTGACATGACAGCTCACCGTTAC 546 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||||| ||||| || ||||||| ||||| || |||||| Sbjct 547 ACACGTAGAACTGGACGAAGGCGTGACAGGGAGGCAGCGCCATC 590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426668825611680