Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq150367 125 7e-24 >seq150367 Length=3699 Score = 125 bits (138), Expect = 7e-24 Identities = 357/541 (66%), Gaps = 31/541 (6%) Strand=Plus/Plus Query 13863 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13922 || || | ||| ||||| ||||| || ||||||||||| ||||| || ||||| || || Sbjct 1839 AACATCAGACAGGCAAAGTCACAGTGTAGGCCCTCATCCCTACTGATCAGTTCATTGGAG 1898 Query 13923 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCG 13982 || || | || ||||| | ||| ||||| | ||||| | || ||||| || || Sbjct 1899 AACGTCAGCCC-GGCATTATCCCTATCTTTTTCAGCCAAATGTTAGCTGCAAAGGAGCCC 1957 Query 13983 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14042 || || || || | || || ||| ||| || | ||| || ||| || Sbjct 1958 GAGAAAAAGATGTCTTCCACCGCATTAAAGGCAA-----------CCA--CGCTGCATTG 2004 Query 14043 TTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCA 14102 | | |||| |||| | ||||||||||| || || || | | | | || ||| Sbjct 2005 TC-TCCGAT--CCATCTAAGAGCCCATTCAGCCTTCTTCTTTGCACACGGCGTGGTCTCA 2061 Query 14103 ATAGCATTAAATAAATATTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTA 14160 | ||||| || | | |||||||| | | | ||||| || | || || || | | Sbjct 2062 TTCGCATTGAAGAGGTGCTCCTTCTCCTGTGGATCCTTGA--TGAAGGTGTCGATCAAGA 2119 Query 14161 AGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAG 14220 || |||||||||||||| || |||||||| || || || || || || ||||| || | Sbjct 2120 GACTGTACATTTCAGAGTGAATATTTTCCATGGCAATTTGGAAGCCCTAGAAGCACCTGG 2179 Query 14221 CTTCCGAC-CATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAAC-----TA 14274 | || | | | ||| || || | ||||| || ||| ||| ||||| || | Sbjct 2180 CCTCGGTCACCTTG-ACCTCTTGGCTGAATCTCTCCACCAGATTCTCATTGACGTTGGTT 2238 Query 14275 TACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT 14334 ||||| ||||| ||||| ||||||| | || ||| || |||| | | |||| Sbjct 2239 GTCCATCGCTAGCCGCAAAGAATGCCAGGACGTGTTTGATGAAGTGTCTTTTGTCATCAC 2298 Query 14335 TGAGTTTTTTCCAATCGGATAAATCC---TTAGAAAGATCTACTTCATCAACTGTCCAAA 14391 | || || | ||| | || || ||| || || || |||||||| ||||||||||| | Sbjct 2299 TCAGCTTCTCCCAGTAGGCCAAGTCCTCTTTCGAGAGGTCTACTTCCTCAACTGTCCAGA 2358 Query 14392 A 14392 | Sbjct 2359 A 2359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478454526044400